read.comethylation: Parse 'tsv' output files from the Python software...
In PeteHaitch/cometh: Analyse, manage and visualise co-methylation data.

Description Usage Arguments Details Value Note See Also Examples

Read the tsv output files from the Python software comethylation and construct a CoMeth object.

1 2	read.comethylation(files, sample_names, methylation_types, seqinfo, quiet = FALSE)

`files`	The `.tsv` files created by `comethylation`. These files may be compressed with gzip or bzip2.
`sample_names`	The sample names of each file.
`methylation_types`	A character vector with the type of methylation type of each file.
`quiet`	logical: if `FALSE` (default), `read.comethylation()` will print a line, saying how many items (m-tuples) have been read per file.
`seqinfo`	A `Seqinfo` object containing information about the reference genome of the sample.

All files should be of the same size m-tuples, e.g. all 2-tuples.

A CoMeth object

The compression of file is determined by the file extension: .gz for compressed with gzip and .bz2 for compressed with bzip2. Otherwise the file is assumed to be uncompressed.

CoMeth