|betaCor||Compute correlations of pairs of beta-values.|
|cometh||The constructor function for CoMeth objects|
|CoMeth-class||An S4 class to store co-methylation patterns at m-tuples of...|
|fread.comethylation||A faster version of 'read.comethylation'|
|getCoverage-CoMeth-method||Get the 'coverage' from a 'CoMeth' object.|
|getPos||Extract the genomic positions from an 'MTuples' object.|
|makeMLS||Make a MethylationLociSet for a type of methylation and a...|
|MethylationLociSet||The constructor function for MethylationLociSet objects.|
|MTuples-class||An S4 class to represent m-tuples of genomic positions.|
|read.comethylation||Parse 'tsv' output files from the Python software...|
|read.mbias||Read the M-bias.txt file produced from Bismark.|
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