annotate.growth: Add the growth information onto the known tree.
In PoonLab/clustuneR: Molecular clustering implementation and predictive optimization
annotate.growth R Documentation
Add the growth information onto the known tree.
Description
Add the growth information onto the known tree.
Usage
annotate.growth(phy, ptree)
Arguments
phy:
ape::phylo object. Return value of extend.tree().
ptree:
ape::phylo object. A tree generated by pplacer with a
newly added tip placed by maximum likelihood.
Value
data.table. The growth.info for a given tree. This includes the
branch length to the newly added terminal node, whether or not the
neighbour to the newly added terminal node is also terminal, and the
branch length to that neighbour, from the newly placed internal node
(the "PendantLength")
PoonLab/clustuneR documentation built on Jan. 29, 2024, 2:40 a.m.
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| annotate.growth | R Documentation |
Add the growth information onto the known tree.
Description
Add the growth information onto the known tree.
Usage
annotate.growth(phy, ptree)
Arguments
phy: |
ape::phylo object. Return value of extend.tree(). |
ptree: |
ape::phylo object. A tree generated by pplacer with a newly added tip placed by maximum likelihood. |
Value
data.table. The growth.info for a given tree. This includes the branch length to the newly added terminal node, whether or not the neighbour to the newly added terminal node is also terminal, and the branch length to that neighbour, from the newly placed internal node (the "PendantLength")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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