annotate.paths: Get paths relative to starting nodes

In PoonLab/clustuneR: Molecular clustering implementation and predictive optimization

Get paths relative to starting nodes

Description

Called by extend.tree. Adds path info to the tree, ie. The path of branches from each node to the root. Required for step.cluster()

Usage

annotate.paths(phy)

Arguments

phy:	ape::phylo object. An inputted tree An inputted tree passed by extend.tree.

Value

list of N matrices, where N is the number of nodes in the input tree. Each matrix has dimension 3 x P, where P is the path length from the node to the root (inclusive). The three rows are: - Node: integer index of node in path. - Boot: bootstrap support associated with the node - BranchLength: length of branch associated with the node For the root, no branch length is given (NA) and Boot is set to 1.

PoonLab/clustuneR documentation built on Jan. 29, 2024, 2:40 a.m.