annotate.nodes: Prepare nodes in tree for clustering
In PoonLab/clustuneR: Molecular clustering implementation and predictive optimization
annotate.nodes R Documentation
Prepare nodes in tree for clustering
Description
Groups meta data by descendant. This also includes bootstrap certainty referenced
by node labels in the ape object. Unlabeled nodes are defaulted to a bootstrap
value of 1 (maximum certainty), including the root.
Usage
annotate.nodes(phy, max.boot = NA)
Arguments
phy:
An inputted tree passed by extend.tree. Should contain seq.info
max.boot:
numeric, user specifies maximum bootstrap value (usually
1 or 100).
Value
: data frame, "node.info" to a annotate the information under a given
node at a tree.
PoonLab/clustuneR documentation built on Jan. 29, 2024, 2:40 a.m.
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| annotate.nodes | R Documentation |
Prepare nodes in tree for clustering
Description
Groups meta data by descendant. This also includes bootstrap certainty referenced by node labels in the ape object. Unlabeled nodes are defaulted to a bootstrap value of 1 (maximum certainty), including the root.
Usage
annotate.nodes(phy, max.boot = NA)
Arguments
phy: |
An inputted tree passed by extend.tree. Should contain seq.info |
max.boot: |
numeric, user specifies maximum bootstrap value (usually 1 or 100). |
Value
: data frame, "node.info" to a annotate the information under a given node at a tree.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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