translate.log | R Documentation |
Parses the logfile output of tree building software to find information relevant to pplacer. Prints stats to a temporary ref.pkg file and returns the file path NOTE: Currently compatible with GTR substitution model and either FastTree, RAxML or IQ-TREE logfiles. Working to extend this to PhyML logfiles, and to different models of evolution
translate.log(log.file)
log.file: |
A path to the logfile from a tree construction run. |
A json output to be written to a given stats.file for pplacer
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