translate.log: Build a stats.json
In PoonLab/clustuneR: Molecular clustering implementation and predictive optimization
translate.log R Documentation
Build a stats.json
Description
Parses the logfile output of tree building software to find information relevant
to pplacer. Prints stats to a temporary ref.pkg file and returns the file path
NOTE: Currently compatible with GTR substitution model and either FastTree,
RAxML or IQ-TREE logfiles. Working to extend this to PhyML logfiles, and to
different models of evolution
Usage
translate.log(log.file)
Arguments
log.file:
A path to the logfile from a tree construction run.
Value
A json output to be written to a given stats.file for pplacer
PoonLab/clustuneR documentation built on Jan. 29, 2024, 2:40 a.m.
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| translate.log | R Documentation |
Build a stats.json
Description
Parses the logfile output of tree building software to find information relevant to pplacer. Prints stats to a temporary ref.pkg file and returns the file path NOTE: Currently compatible with GTR substitution model and either FastTree, RAxML or IQ-TREE logfiles. Working to extend this to PhyML logfiles, and to different models of evolution
Usage
translate.log(log.file)
Arguments
log.file: |
A path to the logfile from a tree construction run. |
Value
A json output to be written to a given stats.file for pplacer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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