translate.log: Build a stats.json

View source: R/tree-setup.R

translate.logR Documentation

Build a stats.json

Description

Parses the logfile output of tree building software to find information relevant to pplacer. Prints stats to a temporary ref.pkg file and returns the file path NOTE: Currently compatible with GTR substitution model and either FastTree, RAxML or IQ-TREE logfiles. Working to extend this to PhyML logfiles, and to different models of evolution

Usage

translate.log(log.file)

Arguments

log.file:

A path to the logfile from a tree construction run.

Value

A json output to be written to a given stats.file for pplacer


PoonLab/clustuneR documentation built on Jan. 29, 2024, 2:40 a.m.