Files in PredictiveEcology/SpaDES.core

Core Utilities for Developing and Running Spatially Explicit Discrete Event Models

.Rbuildignore

.gitattributes

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/revdeps.yaml

.github/workflows/test-coverage.yaml

.github/workflows/update-citation-cff.yaml

.gitignore

.lintr

CONTRIBUTING.md

CRAN-SUBMISSION

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/Plots.R R/cache.R R/check.R R/checkpoint.R R/code-checking.R R/convertToPackage.R R/copy.R R/debugging.R R/downloadData.R R/environment.R R/helpers.R R/load.R R/memory-leaks.R R/memory.R R/misc-methods.R R/modActiveBinding.R R/module-define.R R/module-dependencies-class.R R/module-dependencies-methods.R R/module-repository.R R/module-template.R R/moduleCoverage.R R/moduleMetadata.R R/objectSynonyms.R R/options.R R/paths.R R/plotting-diagrams.R R/plotting.R R/priority.R R/progress.R R/project-template.R R/reexports.R R/restart.R R/save.R R/saveLoadSimList.R R/simList-accessors.R R/simList-class.R R/simulation-parseModule.R R/simulation-simInit.R R/simulation-spades.R R/spades-classes.R R/spades-core-deprecated.R R/spades-core-package.R R/suppliedElsewhere.R R/times.R R/zzz.R README.md

SpaDES.core.Rproj

_pkgdown.yml

codecov.yml

cran-comments.md

inst/WORDLIST

inst/examples/example_inputs.R inst/examples/example_moduleMetadata.R inst/examples/example_moduleParamsInputsOuputs.R inst/examples/example_moduleVersion.R inst/examples/example_outputs.R

inst/extdata/abundRaster.tif

inst/extdata/abundRaster.tif.aux.xml

inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.R inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.Rmd inst/sampleModules/SpaDES_sampleModules/SpaDES_sampleModules.pdf inst/sampleModules/caribouMovement/caribouMovement.R inst/sampleModules/fireSpread/fireSpread.R inst/sampleModules/randomLandscapes/randomLandscapes.R

inst/templates/LICENSE.template

inst/templates/NEWS.template

inst/templates/README.template

inst/templates/citation.bib.template

inst/templates/data-gitignore.template

inst/templates/module.R.template

inst/templates/module.Rmd.template

inst/templates/modulePartialEvents.R.template

inst/templates/modulePartialMeta.R.template

inst/templates/project.R.template

inst/templates/render-module-rmd.yaml.template

inst/templates/test-template.R.template

inst/templates/unitTests.R.template

man/Copy.Rd man/Plot.Rd man/Plots.Rd man/SpaDES.core-package.Rd man/addChangedAttr.Rd man/addDepends.Rd man/addTagsToOutput.Rd man/all.equal.simList.Rd man/anyPlotting.Rd man/append_attr.Rd man/bindrows.Rd man/cacheMessage.Rd man/checkCacheRepo.Rd man/checkModule.Rd man/checkModuleLocal.Rd man/checkObject.Rd man/checkParams.Rd man/checkpoint.Rd man/checksums.Rd man/citation.Rd man/classFilter.Rd man/clearCache.Rd man/convertToPackage.Rd man/copyModule.Rd man/coreModules.Rd man/createsOutput.Rd man/dealWithClass.Rd man/defineEvent.Rd man/defineModule.Rd man/defineParameter.Rd man/deprecated.Rd man/depsEdgeList.Rd man/depsGraph.Rd man/depsLoadOrder.Rd man/depsPruneEdges.Rd man/doEvent.Rd man/dot-cleanPkgs.Rd man/dot-findObjects.Rd man/dot-guessPkgFun.Rd man/downloadData.Rd man/downloadModule.Rd man/emptyEventList.Rd man/emptyMetadata.Rd man/eventDiagram.Rd man/expectsInput.Rd man/extractURL.Rd

man/figures/SpaDES-overview-diagram.png

man/figures/SpaDES.png

man/figures/scoping.png

man/fileEdit.Rd man/fileName.Rd man/fileTable.Rd man/fillInputRows.Rd man/fillOutputRows.Rd man/findElements.Rd man/findModuleName.Rd man/findSimList.Rd man/ganttStatus.Rd man/getModuleInputObjects.Rd man/getModuleVersion.Rd man/getOption.Rd man/getSampleFiles.Rd man/globals.Rd man/identifyChildModules.Rd man/initialize-method.Rd man/inputObjectsDF.Rd man/isNamespaced.Rd man/keepAttrs.Rd man/loadFiles.Rd man/loadSimList.Rd man/makeMemoisable.Rd man/maxTimeunit.Rd man/memoryUse.Rd man/minTimeunit.Rd man/modifySearchPath.Rd man/moduleCodeFiles.Rd man/moduleCoverage.Rd man/moduleDefaults.Rd man/moduleDeps-class.Rd man/moduleDiagram.Rd man/moduleGraph.Rd man/moduleMetadata.Rd man/moduleParamsInputsOuputs.Rd man/moduleVersion.Rd man/namespacing.Rd man/newModule.Rd man/newModuleCode.Rd man/newModuleDocumentation.Rd man/newModuleTests.Rd man/newProject.Rd man/newProjectCode.Rd man/objSize.simList.Rd man/objectDiagram.Rd man/objectSynonyms.Rd man/objects.Rd man/openModules.Rd man/packages.Rd man/paramCheckOtherMods.Rd man/params.Rd man/parseElems.Rd man/parseMessage.Rd man/parseModule.Rd man/pkgEnv.Rd man/preDigestByClass.Rd man/prepareOutput.Rd man/priority.Rd man/progress.Rd man/progressBar.Rd man/quickCheck.Rd man/rasterCreate.Rd man/rasterToMemory.Rd man/reexports.Rd man/remoteFileSize.Rd man/restartR.Rd man/restartSpades.Rd man/rndstr.Rd man/robustDigest.Rd man/runCodeChecks.Rd man/runModuleInputsObjects.Rd man/saveFiles.Rd man/saveSimList.Rd man/scheduleConditionalEvent.Rd man/scheduleEvent.Rd man/setPaths.Rd man/show-method.Rd man/sim2gantt.Rd man/simDeps-class.Rd man/simFile.Rd man/simInit.Rd man/simInitAndSpades.Rd man/simList-accessors-envir.Rd man/simList-accessors-events.Rd man/simList-accessors-inputs.Rd man/simList-accessors-metadata.Rd man/simList-accessors-modules.Rd man/simList-accessors-outputs.Rd man/simList-accessors-paths.Rd man/simList-accessors-times.Rd man/simList-class.Rd man/spades-classes.Rd man/spades.Rd man/spadesOptions.Rd man/spadesTime.Rd man/sub-simList-character-ANY-method.Rd man/suppliedElsewhere.Rd man/tagsByClass.Rd man/timeConversion.Rd man/tryCatch.Rd man/unparsed.Rd man/updateList.Rd man/use_gha.Rd man/verb.Rd man/writeEventInfo.Rd man/writeRNGInfo.Rd man/zipModule.Rd

revdep/.gitignore

revdep/README.md revdep/check.R

revdep/checks.rds

revdep/cran.md

revdep/email.yml

revdep/failures.md revdep/problems.md revdep/timing.md tests/test-all.R tests/testthat/helper-initTests.R tests/testthat/test-1memory.R tests/testthat/test-Copy.R tests/testthat/test-Plots.R tests/testthat/test-cache.R tests/testthat/test-checkpoint.R tests/testthat/test-conditionalEvents.R tests/testthat/test-downloadData.R tests/testthat/test-downloadModule.R tests/testthat/test-environment.R tests/testthat/test-futureEvents.R tests/testthat/test-load.R tests/testthat/test-misc.R tests/testthat/test-mod.R tests/testthat/test-module-deps-methods.R tests/testthat/test-module-template.R tests/testthat/test-multipleModulePaths.R tests/testthat/test-objectSynonyms.R tests/testthat/test-paths.R tests/testthat/test-save.R tests/testthat/test-simList.R tests/testthat/test-simulation.R tests/testthat/test-timeunits.R tests/testthat/test-userSuppliedObjs.R

vignettes/.gitignore

vignettes/bibliography.bib

vignettes/i-introduction.R vignettes/i-introduction.Rmd vignettes/ii-modules.R vignettes/ii-modules.Rmd

vignettes/ii-modules_files/DiagrammeR-binding-1.0.10/DiagrammeR.js

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vignettes/ii-modules_files/DiagrammeR-binding-1.0.9/DiagrammeR.js

vignettes/ii-modules_files/DiagrammeR-styles-0.2/styles.css

vignettes/ii-modules_files/accessible-code-block-0.0.1/empty-anchor.js

vignettes/ii-modules_files/chromatography-0.1/LICENSE

vignettes/ii-modules_files/chromatography-0.1/chromatography.js

vignettes/ii-modules_files/d3-3.3.8/LICENSE

vignettes/ii-modules_files/d3-3.3.8/d3.min.js

vignettes/ii-modules_files/dagre-0.4.0/LICENSE

vignettes/ii-modules_files/dagre-0.4.0/dagre-d3.min.js

vignettes/ii-modules_files/elevate-section-attrs-2.0/elevate-section-attrs.js

vignettes/ii-modules_files/figure-html/module-object-diagrams-1.png

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vignettes/ii-modules_files/htmlwidgets-1.6.2/htmlwidgets.js

vignettes/ii-modules_files/jquery-1.11.3/jquery.min.js

vignettes/ii-modules_files/mermaid-0.3.0/LICENSE

vignettes/ii-modules_files/mermaid-0.3.0/dist/mermaid.css

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vignettes/iii-cache.R vignettes/iii-cache.Rmd vignettes/iv-advanced.R vignettes/iv-advanced.Rmd vignettes/v-automated-testing.Rmd

PredictiveEcology/SpaDES.core documentation built on April 17, 2024, 8:27 a.m.