Files in PriceLab/FPML
Footprint Machine Learning
DESCRIPTION
NAMESPACE
R/annotateDataset.R
R/buildModels.R
R/constructMotifDataset.R
R/mergeFootprintData.R
R/plot_functions.R
R/stat_functions.R
README.md
inst/extdata/.Rhistory
inst/extdata/2017_08_23_Motif_TF_Map.RDS
inst/extdata/Tfmotifmap.Rdata
inst/extdata/annotateTestInput.Rdata
inst/extdata/buildTestInput.Rdata
inst/extdata/chipSeqData.Rdata
inst/extdata/fpSubTables.Rdata
inst/extdata/joinedAllStats.10M.filtered.Rdata
inst/extdata/mergeTestData.1000.Rdata
inst/extdata/motif_class_pairs.Rdata
inst/extdata/testData.Rdata
inst/extdata/testMCC.png
inst/extdata/testModels.Rdata
inst/extdata/testPrec.png
inst/extdata/testROC.png
inst/extdata/testThreshold.png
inst/extdata/testTruth.png
inst/extdata/test_truth.png
inst/extdata/test_truthplot2.png
inst/unitTests/test_annotateDataset.R
inst/unitTests/test_buildModels.R
inst/unitTests/test_constructMotifDataset.R
inst/unitTests/test_mergeFootprintData.R
man/FPML-package.Rd
man/addTSSDistance.Rd
man/annotateFootprintData.Rd
man/buildBoostedModel.Rd
man/buildLinearModels.Rd
man/constructLymphoblastDataset.Rd
man/createBiasOneMotif.Rd
man/createMotifClassMap.Rd
man/createTfDf.Rd
man/createThresholdPlot.Rd
man/createTruthPlot.Rd
man/extractMaxMCC.Rd
man/getGCContent.Rd
man/joinModelData.Rd
man/make.pred.df.from.glm.Rd
man/make.pred.df.from.model.Rd
man/make.stats.df.from.preds.Rd
man/mapTFsToMotifs.Rd
man/mattcc.Rd
man/mattcc.curve.Rd
man/mergeFootprintsOneChrom.Rd
man/mergeLymphoblastFootprints.Rd
man/plot.all.curve.Rd
man/plot.mattcc.curve.Rd
man/plot.precrecall.curve.Rd
man/plot.roc.curve.Rd
man/plotImportanceMatrix.Rd
man/plotStatCurves.Rd
man/prepModelData.Rd
man/sampleTfDataset.Rd
vignettes/Intro_to_FPML.Rmd
