getGCContent: Add GC content

In PriceLab/FPML: Footprint Machine Learning

Description

Add GC content to a row of the data frame containing FIMO motifs and footprint data

Usage

getGCContent(start_col, end_col, chrom_col, shoulder = 100)

Arguments

start_col	The name of the column containing the starting location of each motif
end_col	The name of the column containing the ending location of each motif
chrom_col	The name of the column containing the chromosome for each motif
shoulder	An integer indicating the distance on either side of the center of the sequence to use as a window (default = 100)

Value

The GC content of the supplied region

PriceLab/FPML documentation built on May 28, 2019, 2:25 p.m.