constructLymphoblastDataset: Construct the Lymphoblast Datast

Description Usage Arguments Value

Description

Using the included ChIPSeq data, construct the lymphoblast dataset

Usage

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constructLymphoblastDataset(distinctFlag = TRUE, sampleSize = NULL,
  numWorkers = 62, fimoHost = "localhost", fimoPort = "5432",
  isTest = FALSE)

Arguments

distinctFlag

A Boolean flag indicating whether or not to take just the unique rows of the data frame (default = TRUE)

sampleSize

An integer value indicating how many rows of the data frame to take. If this argument is not specified or make to be NULL, the entire data frame will be returned (default = NULL)

numWorkers

The number of parallel processes that should be run; in general, this should either be set to the number of expected TFs or to a number restricted by the constraints of the system (default = 62)

fimoHost

A string indicating the location of the FIMO database (default = "localhost")

fimoPort

A string indicating the port where the FIMO database is located (default = "5432")

isTest

A Boolean flag indicating whether this script is being run as a test. If TRUE, it will only use 2 TFs instead of the full set to save on time (default = FALSE)

Value

The complete motif/ChIPSeq dataset for lymphoblast


PriceLab/FPML documentation built on May 28, 2019, 2:25 p.m.