mergeLymphoblastFootprints: Merge Footprints for Lymphoblast Data

In PriceLab/FPML: Footprint Machine Learning

Description

Merge the HINT and Wellington footprints into the dataframe of FIMO motifs and ChIPSeq Data for all chromosomes

Usage

mergeLymphoblastFootprints(fimo.df, seedNum, host = "localhost",
  port = "5432", verbose = TRUE)

Arguments

fimo.df	A data frame containing FIMO motifs and ChIPSeq data, generally constructed using the constructLymphoblastDataset.R function
seedNum	A number (either 16 or 20) denoting which seed size to use for the merge
host	A string denoting the database host (default = "localhost")
port	A string denoting the database port (default = "5432")
verbose	A Boolean value that determines whether the function should print output during the merge (default = TRUE)

Value

The supplied FIMO/ChIPSeq data frame with added columns for HINT count, HINT maximum score, Wellington count, and Wellington minimum score

PriceLab/FPML documentation built on May 28, 2019, 2:25 p.m.