createThresholdPlot: Create a threshold plot
In PriceLab/FPML: Footprint Machine Learning
Description
Usage
Arguments
Value
Description
Create a "threshold" plot, which plots the 3 relevant prediction metrics against threshold to
enable identification of the ideal "threshold" for ChIPseq hit probability.
Usage
1
createThresholdPlot(stats.df, modelName, plotFile)
Arguments
stats.df
A dataframe of statistics generated by one of the model runs
modelName
A string containing a model name from the stats data frame. To see the options
available, use unique(stats.df$Model.Name)
plotFile
A path to a file for saving the generated plot as a .png file
Value
A .png file containing a plot of 3 metrics (sensitivity, specificity, ppv) as a function
of threshold
PriceLab/FPML documentation built on May 28, 2019, 2:25 p.m.
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Description Usage Arguments Value
Description
Create a "threshold" plot, which plots the 3 relevant prediction metrics against threshold to enable identification of the ideal "threshold" for ChIPseq hit probability.
Usage
1 | createThresholdPlot(stats.df, modelName, plotFile)
|
Arguments
stats.df |
A dataframe of statistics generated by one of the model runs |
modelName |
A string containing a model name from the stats data frame. To see the options available, use unique(stats.df$Model.Name) |
plotFile |
A path to a file for saving the generated plot as a .png file |
Value
A .png file containing a plot of 3 metrics (sensitivity, specificity, ppv) as a function of threshold
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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