mergeFootprintsOneChrom: Merge Footprints for 1 Chromosome

In PriceLab/FPML: Footprint Machine Learning

Description

Merge HINT and Wellington footprints into the dataframe of FIMO motifs and ChipSeq for 1 chromosome

Usage

mergeFootprintsOneChrom(chrom_str, fimo_tbl, hint_regions_tbl, hint_hits_tbl,
  well_regions_tbl, well_hits_tbl)

Arguments

chrom_str	A string representing one chromosome; must be one of c(1:22, "X", "Y")
fimo_tbl	A dataframe of FIMO motifs and ChIPSeq data
hint_regions_tbl	A database table of HINT regions
hint_hits_tbl	A database table of HINT hits
well_regions_tbl	A database table of Wellington regions
well_hits_tbl	A database table of Wellington hits

Value

The original FIMO dataframe with added columns for footprint counts and the maximum or minimum score

PriceLab/FPML documentation built on May 28, 2019, 2:25 p.m.