Files in PriceLab/TrenaMultiScore
TrenaMultiScore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/TrenaMultiScore.R
R/tmsCore.R
README.md
inst/demos/trenaViz/tv.R
inst/docker/Dockerfile
inst/docker/makefile
inst/docker/packages/makefile
inst/extdata/expression/thioglycollate-elicited-peritoneal-macrophages.RData
inst/extdata/geneSets/basic.txt
inst/extdata/genomeAnnotations.RData
inst/extdata/tbl.eqtl.ndufs2.small.RData
inst/extdata/tbl.fimo.1e3.100bp-rs34884997.ndufs2.RData
inst/extdata/tbl.fimo.1e3.512bp.ndufs2.RData
inst/extdata/tbl.fimo.1e5.ndufs2.RData
inst/extdata/tbl.fimo.hoxb4-1e5.RData
inst/extdata/tbl.ndufs2.eqtl.smallSample.RData
inst/shiny/tmsNavigator-jan2021-shinyio/intro.html
inst/shiny/tmsNavigator-jan2021-shinyio/tmsNavigator.R
inst/shiny/tmsNavigator-jan2021-shinyio/toHeatmapMatrix.R
inst/unitTests/test-demo_runTmsCore.R
inst/unitTests/test_TrenaMultiScore-mm10.R
inst/unitTests/test_TrenaMultiScore.R
inst/unitTests/test_gata2.R
makefile
man/TrenaMultiScore-class.Rd
man/addChIP.Rd
man/addDistanceToTSS.Rd
man/addGeneExpressionCorrelations.Rd
man/addGenicAnnotations.Rd
man/addRnaBindingProteins.Rd
man/findOpenChromatin.Rd
man/getFimoTFBS.Rd
man/getGeneHancerRegion.Rd
man/getMoodsTFBS.Rd
man/getMultiScoreTable.Rd
man/getOpenChromatin.Rd
man/getProject.Rd
man/getRnaBindingProteins.Rd
man/getTargetGeneInfo.Rd
man/scoreMotifHitsForConservation.Rd
man/scoreMotifHitsForGeneHancer.Rd
misc/AD/tenGenesForCory/boca.fimo3/combine.R
misc/AD/tenGenesForCory/boca.fimo3/tenGenesFimo3.RData
misc/AD/tenGenesForCory/boca.fimo4/combine.R
misc/AD/tenGenesForCory/boca.fimo4/tenGenesFimo4.RData
misc/AD/tenGenesForCory/tmp.meme
misc/AD/tenGenesForCory/tms.R
misc/erythropoiesis/all.haney.tfs/fimo5/combine.R
misc/erythropoiesis/all.haney.tfs/haney.R
misc/erythropoiesis/all.haney.tfs/tmp.meme
misc/erythropoiesis/chromVAR/chromVAR-result.R
misc/erythropoiesis/chromVAR/tbl.zbtb7a.RData
misc/erythropoiesis/marjorieDemos/G2vsG3GenesUP.txt
misc/erythropoiesis/marjorieDemos/additionalGenes.txt
misc/erythropoiesis/marjorieDemos/buildAny.R
misc/erythropoiesis/marjorieDemos/collectResults/collect-all.R
misc/erythropoiesis/marjorieDemos/collectResults/collect-tbx15.R
misc/erythropoiesis/marjorieDemos/collectResults/toDataBase.R
misc/erythropoiesis/marjorieDemos/shiny/Dockerfile
misc/erythropoiesis/marjorieDemos/shiny/collect-tbx15.R
misc/erythropoiesis/marjorieDemos/shiny/exploreBindingSites.R
misc/erythropoiesis/marjorieDemos/shiny/installPrerequisites.R
misc/erythropoiesis/marjorieDemos/shiny/makefile
misc/erythropoiesis/marjorieDemos/tms.R
misc/erythropoiesis/marjorieDemos/tmsShinyNavigator/Dockerfile
misc/erythropoiesis/marjorieDemos/tmsShinyNavigator/installPrerequisites.R
misc/erythropoiesis/marjorieDemos/tmsShinyNavigator/makefile
misc/erythropoiesis/marjorieDemos/tmsShinyNavigator/pkgs/dataTableWidget_1.0.8.tar.gz
misc/erythropoiesis/marjorieDemos/tmsShinyNavigator/tbl.afp.RData
misc/erythropoiesis/marjorieDemos/tmsShinyNavigator/tmsShinyNavigator.R
misc/erythropoiesis/tal1/tal1.R
misc/erythropoiesis/tal1/tmp.meme
misc/hematopoiesis/docs/ZNF410-CHD4.pdf
misc/hematopoiesis/prep-jan2021/buildAny-oct2020.R
misc/hematopoiesis/prep-jan2021/buildTable.R
misc/hematopoiesis/prep-jan2021/tmp.meme
misc/installDependencies.R
misc/saez-benchmarks/database.csv
tools/runner/v0/test_tms-chd1.R
tools/runner/v0/test_tmsRunner.R
tools/runner/v0/tmp.meme
tools/runner/v0/tmsRunner.R
tools/runner/v1/bach1.R
tools/runner/v1/cebpb.R
tools/runner/v1/chd1.R
tools/runner/v1/chd3.R
tools/runner/v1/chd4.R
tools/runner/v1/consolidate.R
tools/runner/v1/ctbp2.R
tools/runner/v1/ctcf.R
tools/runner/v1/determineRegionForModel.R
tools/runner/v1/dnmt1.R
tools/runner/v1/dot1l.R
tools/runner/v1/getGeneTargets-103.R
tools/runner/v1/getTargetGenes.R
tools/runner/v1/runAll.R
tools/runner/v1/tmp.meme
tools/runner/v1/tmsCore.R
tools/runner/v1/tmsRunner.R
tools/runner/v2/test-demo_runTmsCore.R
tools/runner/v2/tmsCore.R
