getMoodsTFBS: get scored moods motif binding sites

In PriceLab/TrenaMultiScore: TrenaMultiScore

get scored moods motif binding sites

Description

call moods (wrapped by motifmatchr package) to get data.frame of all matches above threshold

Usage

## S4 method for signature 'TrenaMultiScore'
findMoodsTFBS(
  obj,
  motifs = NA,
  moods.threshold = NA,
  chrom = NA,
  start = NA,
  end = NA
)

Arguments

motifs	a list of MotifDb items, JASPAR2019 hsapiens by default
moods.threshold	1e-4 by default
chrom	geneHancerRegion chrom by default
start	geneHancerRegion start by default
end	geneHancerRegion end by default

Value

a data.frame

PriceLab/TrenaMultiScore documentation built on Aug. 22, 2022, 8:01 a.m.