scoreMotifHitsForConservation: add open chromatin intersection info (none, partial, complete...

In PriceLab/TrenaMultiScore: TrenaMultiScore

add open chromatin intersection info (none, partial, complete for the currently held fimo table

Description

adds "none", "partial", "complete" annotation to the "oc" column for each motif hit in the already built (or supplied) fimo table, using the current obj@state$openChromatin table

adds several conservation scores, each an average, to each motif hit in the already build fimo table

Usage

## S4 method for signature 'TrenaMultiScore'
scoreMotifHitsForOpenChromatin(obj)

## S4 method for signature 'TrenaMultiScore'
scoreMotifHitsForConservation(obj)

Arguments

obj	a TrenaMultiScore object

Value

a data.frame

a data.frame

PriceLab/TrenaMultiScore documentation built on Aug. 22, 2022, 8:01 a.m.