getFimoTFBS: get scored FIMO motif binding sites

In PriceLab/TrenaMultiScore: TrenaMultiScore

get scored FIMO motif binding sites

Description

call FimoBatch to get data.frame of all matches above threshold

Usage

## S4 method for signature 'TrenaMultiScore'
findFimoTFBS(
  obj,
  motifs = list(),
  fimo.threshold = NA,
  chrom = NA,
  start = NA,
  end = NA,
  genome = "hg38"
)

Arguments

motifs	a list of MotifDb items, JASPAR2019 hsapiens by default
fimo.threshold	1e-4 by default
chrom	geneHancerRegion chrom by default
start	geneHancerRegion start by default
end	geneHancerRegion end by default
genome	character string, "hg38" by default

Value

a data.frame

PriceLab/TrenaMultiScore documentation built on Aug. 22, 2022, 8:01 a.m.