TrenaMultiScore: TrenaMultiScore

addGeneExpressionCorrelations,TrenaMultiScore-method

R Documentation

add a tf/targetGene correlations score for those TFs also in the expression matrix

Description

add a tf/targetGene correlations score for those TFs also in the expression matrix

Usage

## S4 method for signature 'TrenaMultiScore'
addGeneExpressionCorrelations(
  obj,
  mtx,
  featureName = "cor",
  colnames = list(),
  method = "pearson"
)

Arguments

`obj`	a TrenaMultiScore object
`mtx`	a numerical matrix, genes are rownames, samples are colnames
`featureName`	a character string, default "cor", data.frame column where results are stored
`colnames`	list of character strings, limits scope of correlation calcuation. default empty list: use all columns
`method`	a character string, either "spearman" or "pearson"