findOpenChromatin: find open chromatin in the current gene region, or (if...
In PriceLab/TrenaMultiScore: TrenaMultiScore
findOpenChromatin,TrenaMultiScore-method R Documentation
find open chromatin in the current gene region, or (if supplied) somewhere else
Description
Open chromatin from DNase footprints or scATAC-seq is retrieved, saved for later use
Usage
## S4 method for signature 'TrenaMultiScore'
findOpenChromatin(
obj,
chrom = NA,
start = NA,
end = NA,
intersect.with.geneHancer = FALSE,
use.merged.atac = FALSE
)
Arguments
obj
a TrenaMultiScore object
chrom
end, integer, chromosomal location, default NA
PriceLab/TrenaMultiScore documentation built on Aug. 22, 2022, 8:01 a.m.
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| findOpenChromatin,TrenaMultiScore-method | R Documentation |
find open chromatin in the current gene region, or (if supplied) somewhere else
Description
Open chromatin from DNase footprints or scATAC-seq is retrieved, saved for later use
Usage
## S4 method for signature 'TrenaMultiScore' findOpenChromatin( obj, chrom = NA, start = NA, end = NA, intersect.with.geneHancer = FALSE, use.merged.atac = FALSE )
Arguments
obj |
a TrenaMultiScore object |
chrom |
end, integer, chromosomal location, default NA |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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