addRnaBindingProteins: query remote khaleesi (ingested POSTAR2) database for rna...

In PriceLab/TrenaMultiScore: TrenaMultiScore

query remote khaleesi (ingested POSTAR2) database for rna binding protein binding sites for the target gene

Description

POSTAR2 curated many clip-seq (and related) data sources; we put them in a postgres database, queried here by gene

add eQTL annotations to all appropriate regions

Usage

## S4 method for signature 'TrenaMultiScore'
addRnaBindingProteins(obj)

## S4 method for signature 'TrenaMultiScore'
add.eQTLs(obj, tbl.eqtls, pval, abs.beta, eqtl.title)

Arguments

obj	a TrenaMultiScore object
tbl.eqtls	data.frame, with chrom, start, end, and tissue category columns
pval	numeric only consider eQTLs with pval at or below this threshold
abs.beta	numeric only consider eQTLs with abs(beta) at or above this threshold

Value

data.frame

nothing

PriceLab/TrenaMultiScore documentation built on Aug. 22, 2022, 8:01 a.m.