| .BicorSolver |
Man page
|
| .CandidateFilter |
Man page
|
| .EnsembleSolver |
Man page
|
| .FootprintFilter |
Man page
|
| .FootprintFinder |
Man page
|
| .GeneOntologyFilter |
Man page
|
| .HumanDHSFilter |
Man page
|
| .LassoPVSolver |
Man page
|
| .LassoSolver |
Man page
|
| .MotifMatcher |
Man page
|
| .PearsonSolver |
Man page
|
| .RandomForestSolver |
Man page
|
| .RidgeSolver |
Man page
|
| .Solver |
Man page
|
| .SpearmanSolver |
Man page
|
| .Trena |
Man page
|
| .VarianceFilter |
Man page
|
| .XGBoostSolver |
Man page
|
| .callFootprintFilter |
Source code
|
| .callHumanDHSFilter |
Source code
|
| .findMotifs |
Source code
|
| .getScoredMotifs |
Source code
|
| .injectSnp |
Source code
|
| .matchPwmForwardAndReverse |
Source code
|
| .normalize_betaValues |
Source code
|
| .normalize_correlationValues |
Source code
|
| .normalize_pval |
Source code
|
| .normalize_randomForest |
Source code
|
| .parseLine |
Source code
|
| .pcaMax |
Man page
|
| BicorSolver |
Man page
Source code
|
| BicorSolver-class |
Man page
|
| CandidateFilter |
Man page
Source code
|
| CandidateFilter-class |
Man page
|
| EnsembleSolver |
Man page
Source code
|
| EnsembleSolver-class |
Man page
|
| FeatureTable |
Man page
|
| FootprintFilter |
Man page
Source code
|
| FootprintFilter-class |
Man page
|
| FootprintFinder |
Man page
Source code
|
| FootprintFinder-class |
Man page
|
| GeneOntologyFilter |
Man page
Source code
|
| GeneOntologyFilter-class |
Man page
|
| HumanDHSFilter |
Man page
Source code
|
| HumanDHSFilter-class |
Man page
|
| LassoPVSolver |
Man page
Source code
|
| LassoPVSolver-class |
Man page
|
| LassoSolver |
Man page
Source code
|
| LassoSolver-class |
Man page
|
| MotifMatcher |
Man page
Source code
|
| MotifMatcher-class |
Man page
|
| PCAMax |
Man page
Source code
|
| PearsonSolver |
Man page
Source code
|
| PearsonSolver-class |
Man page
|
| RandomForestSolver |
Man page
Source code
|
| RandomForestSolver-class |
Man page
|
| RidgeSolver |
Man page
Source code
|
| RidgeSolver-class |
Man page
|
| Solver |
Man page
Source code
|
| Solver-class |
Man page
|
| SpearmanSolver |
Man page
Source code
|
| SpearmanSolver-class |
Man page
|
| Trena |
Man page
Source code
|
| Trena-class |
Man page
|
| VarianceFilter |
Man page
Source code
|
| VarianceFilter-class |
Man page
|
| XGBoostSolver |
Man page
Source code
|
| XGBoostSolver-class |
Man page
|
| addStats |
Man page
|
| addStats,PCAMax-method |
Man page
|
| addStatsSimple |
Man page
|
| addStatsSimple,PCAMax-method |
Man page
|
| assessSnp |
Man page
|
| assessSnp,Trena-method |
Man page
|
| closeDatabaseConnections |
Man page
|
| closeDatabaseConnections,FootprintFinder-method |
Man page
|
| createGeneModelFromRegulatoryRegions |
Man page
|
| createGeneModelFromRegulatoryRegions,Trena-method |
Man page
|
| createGeneModelFromTfList |
Man page
|
| createGeneModelFromTfList,Trena-method |
Man page
|
| elasticNetSolver |
Man page
|
| findMatchesByChromosomalRegion |
Man page
|
| findMatchesByChromosomalRegion,MotifMatcher-method |
Man page
|
| getAssayData |
Man page
|
| getAssayData,Solver-method |
Man page
|
| getAvailableSolvers |
Man page
Source code
|
| getCandidates |
Man page
|
| getCandidates,FootprintFilter-method |
Man page
|
| getCandidates,GeneOntologyFilter-method |
Man page
|
| getCandidates,HumanDHSFilter-method |
Man page
|
| getCandidates,VarianceFilter-method |
Man page
|
| getCandidates-FootprintFilter |
Man page
|
| getCandidates-GeneOntologyFilter |
Man page
|
| getCandidates-HumanDHSFilter |
Man page
|
| getCandidates-VarianceFilter |
Man page
|
| getChromLoc |
Man page
|
| getChromLoc,FootprintFinder-method |
Man page
|
| getCoverage |
Man page
|
| getCoverage,PCAMax-method |
Man page
|
| getEncodeRegulatoryTableNames |
Man page
|
| getEncodeRegulatoryTableNames,HumanDHSFilter-method |
Man page
|
| getFootprintsForGene |
Man page
|
| getFootprintsForGene,FootprintFinder-method |
Man page
|
| getFootprintsInRegion |
Man page
|
| getFootprintsInRegion,FootprintFinder-method |
Man page
|
| getGeneModelTableColumnNames |
Man page
|
| getGeneModelTableColumnNames,Trena-method |
Man page
|
| getGenePromoterRegion |
Man page
|
| getGenePromoterRegion,FootprintFinder-method |
Man page
|
| getGtfGeneBioTypes |
Man page
|
| getGtfGeneBioTypes,FootprintFinder-method |
Man page
|
| getGtfMoleculeTypes |
Man page
|
| getGtfMoleculeTypes,FootprintFinder-method |
Man page
|
| getPfms |
Man page
|
| getPfms,MotifMatcher-method |
Man page
|
| getPromoterRegionsAllGenes |
Man page
|
| getPromoterRegionsAllGenes,FootprintFinder-method |
Man page
|
| getProximalPromoter |
Man page
|
| getProximalPromoter,Trena-method |
Man page
|
| getRegulators |
Man page
|
| getRegulators,Solver-method |
Man page
|
| getRegulatoryChromosomalRegions |
Man page
|
| getRegulatoryChromosomalRegions,Trena-method |
Man page
|
| getRegulatoryRegions |
Man page
|
| getRegulatoryRegions,HumanDHSFilter-method |
Man page
|
| getRegulatoryTableColumnNames |
Man page
|
| getRegulatoryTableColumnNames,Trena-method |
Man page
|
| getSequence |
Man page
|
| getSequence,MotifMatcher-method |
Man page
|
| getSolverNames |
Man page
|
| getSolverNames,EnsembleSolver-method |
Man page
|
| getTarget |
Man page
|
| getTarget,Solver-method |
Man page
|
| normalizeModel |
Man page
|
| normalizeModel,PCAMax-method |
Man page
|
| parseChromLocString |
Man page
Source code
|
| parseDatabaseUri |
Man page
Source code
|
| printf |
Source code
Source code
Source code
Source code
Source code
Source code
Source code
|
| rescalePredictorWeights |
Man page
|
| rescalePredictorWeights,Solver-method |
Man page
|
| run |
Man page
|
| run,BicorSolver-method |
Man page
|
| run,EnsembleSolver-method |
Man page
|
| run,LassoPVSolver-method |
Man page
|
| run,LassoSolver-method |
Man page
|
| run,PearsonSolver-method |
Man page
|
| run,RandomForestSolver-method |
Man page
|
| run,RidgeSolver-method |
Man page
|
| run,SpearmanSolver-method |
Man page
|
| run,XGBoostSolver-method |
Man page
|
| run.BicorSolver |
Man page
|
| run.EnsembleSolver |
Man page
|
| run.LassoPVSolver |
Man page
|
| run.LassoSolver |
Man page
|
| run.PearsonSolver |
Man page
|
| run.RandomForestSolver |
Man page
|
| run.RidgeSolver |
Man page
|
| run.SpearmanSolver |
Man page
|
| run.XGBoostSolver |
Man page
|
| show,BicorSolver-method |
Man page
|
| show,EnsembleSolver-method |
Man page
|
| show,HumanDHSFilter-method |
Man page
|
| show,LassoPVSolver-method |
Man page
|
| show,LassoSolver-method |
Man page
|
| show,MotifMatcher-method |
Man page
|
| show,PearsonSolver-method |
Man page
|
| show,RandomForestSolver-method |
Man page
|
| show,RidgeSolver-method |
Man page
|
| show,SpearmanSolver-method |
Man page
|
| show,XGBoostSolver-method |
Man page
|
| show-HumanDHSFilter |
Man page
|
| show.BicorSolver |
Man page
|
| show.EnsembleSolver |
Man page
|
| show.LassoPVSolver |
Man page
|
| show.LassoSolver |
Man page
|
| show.MotifMatcher |
Man page
|
| show.PearsonSolver |
Man page
|
| show.RandomForestSolver |
Man page
|
| show.RidgeSolver |
Man page
|
| show.SpearmanSolver |
Man page
|
| show.XGBoostSolver |
Man page
|
| solve.Bicor |
Man page
|
| solve.Ensemble |
Man page
|
| solve.Lasso |
Man page
|
| solve.LassoPV |
Man page
|
| solve.Pearson |
Man page
|
| solve.RandomForest |
Man page
|
| solve.Ridge |
Man page
|
| solve.Spearman |
Man page
|
| solve.XGBoost |
Man page
|
| trena-package |
Man page
|
