Man pages for QuackenbushLab/MONSTER
Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
| bereFull | Bipartite Edge Reconstruction from Expression data (composite... |
| calculate.tm.p.values | Calculate p-values for a tranformation matrix |
| checkDataType | Checks that data is something MONSTER can handle |
| dTFIPlot | This function plots the Off diagonal mass of an observed... |
| hcl.heatmap.plot | Transformation matrix plot |
| monster | MOdeling Network State Transitions from Expression and... |
| monsterAnalysis-class | Class "monsterAnalysis" - a list containing the transition... |
| monsterNI | Bipartite Edge Reconstruction from Expression data |
| MONSTER-package | Modeling Network State Transitions from Expression and... |
| monsterRes | MONSTER results from example cell-cycle yeast transition |
| plot.monsterAnalysis | plot.monsterAnalysis |
| print.monsterAnalysis | print.monsterAnalysis |
| transformation.matrix | Bi-partite network analysis tools |
| transitionNetworkPlot | This function uses igraph to plot the transition matrix as a... |
| transitionPCAPlot | Principal Components plot of transformation matrix |
| yeast | Toy data derived from three gene expression datasets and a... |
