transitionNetworkPlot: This function uses igraph to plot the transition matrix as a...

In QuackenbushLab/MONSTER: Modeling Network State Transitions from Expression and Regulatory data (MONSTER)

Description

This function uses igraph to plot the transition matrix as a network

Usage

transitionNetworkPlot(monsterObj, numEdges = 100, numTopTFs = 10)

Arguments

monsterObj	monsterAnalysis Object
numEdges	The number of edges to display
numTopTFs	The number of TFs to display, ranked by largest dTFI

Value

igraph object for transition matrix

Examples

# data(yeast)
# design <- c(rep(0,20),rep(NA,10),rep(1,20))
# monsterRes <- monster(yeast$exp.cc, design, yeast$motif, nullPerms=100, numMaxCores=4)#' 
data(monsterRes)
transitionNetworkPlot(monsterRes)

QuackenbushLab/MONSTER documentation built on Oct. 22, 2020, 8:07 a.m.