calculate.tm.p.values: Calculate p-values for a tranformation matrix
In QuackenbushLab/MONSTER: Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Description
Usage
Arguments
Value
Examples
View source: R/analysis_functions.R
Description
This function calculates the significance of an observed
transition matrix given a set of null transition matrices
Usage
1
calculate.tm.p.values(monsterObj, method = "z-score")
Arguments
monsterObj
monsterAnalysis Object
method
one of 'z-score' or 'non-parametric'
Value
vector of p-values for each transcription factor
Examples
1
2
3
4
5
# data(yeast)
# design <- c(rep(0,20),rep(NA,10),rep(1,20))
# monsterRes <- monster(yeast$exp.cc, design, yeast$motif, nullPerms=100, numMaxCores=4)#'
data(monsterRes)
calculate.tm.p.values(monsterRes)
QuackenbushLab/MONSTER documentation built on Oct. 22, 2020, 8:07 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/analysis_functions.R
Description
This function calculates the significance of an observed transition matrix given a set of null transition matrices
Usage
1 | calculate.tm.p.values(monsterObj, method = "z-score")
|
Arguments
monsterObj |
monsterAnalysis Object |
method |
one of 'z-score' or 'non-parametric' |
Value
vector of p-values for each transcription factor
Examples
1 2 3 4 5 | # data(yeast)
# design <- c(rep(0,20),rep(NA,10),rep(1,20))
# monsterRes <- monster(yeast$exp.cc, design, yeast$motif, nullPerms=100, numMaxCores=4)#'
data(monsterRes)
calculate.tm.p.values(monsterRes)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.