dTFIPlot: This function plots the Off diagonal mass of an observed...

In QuackenbushLab/MONSTER: Modeling Network State Transitions from Expression and Regulatory data (MONSTER)

Description

This function plots the Off diagonal mass of an observed Transition Matrix compared to a set of null TMs

Usage

dTFIPlot(monsterObj, rescale = FALSE, plot.title = NA, highlight.tfs = NA)

Arguments

monsterObj	monsterAnalysis Object
rescale	logical indicating whether to reorder transcription factors according to their statistical significance and to rescale the values observed to be standardized by the null distribution
plot.title	String specifying the plot title
highlight.tfs	vector specifying a set of transcription factors to highlight in the plot

Value

ggplot2 object for transition matrix comparing observed distribution to that estimated under the null

Examples

# data(yeast)
# design <- c(rep(0,20),rep(NA,10),rep(1,20))
# monsterRes <- monster(yeast$exp.cc, design, yeast$motif, nullPerms=100, numMaxCores=4)#' 
data(monsterRes)
dTFIPlot(monsterRes)

QuackenbushLab/MONSTER documentation built on Oct. 22, 2020, 8:07 a.m.