hcl.heatmap.plot: Transformation matrix plot
In QuackenbushLab/MONSTER: Modeling Network State Transitions from Expression and Regulatory data (MONSTER)
Description
Usage
Arguments
Value
Examples
View source: R/analysis_functions.R
Description
This function plots a hierachically clustered heatmap and
corresponding dendrogram of a transaction matrix
Usage
1
hcl.heatmap.plot(monsterObj, method = "pearson")
Arguments
monsterObj
monsterAnalysis Object
method
distance metric for hierarchical clustering.
Default is "Pearson correlation"
Value
ggplot2 object for transition matrix heatmap
Examples
1
2
3
4
5
# data(yeast)
# design <- c(rep(0,20),rep(NA,10),rep(1,20))
# monsterRes <- monster(yeast$exp.cc, design, yeast$motif, nullPerms=100, numMaxCores=4)
data(monsterRes)
hcl.heatmap.plot(monsterRes)
QuackenbushLab/MONSTER documentation built on Oct. 22, 2020, 8:07 a.m.
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Description Usage Arguments Value Examples
View source: R/analysis_functions.R
Description
This function plots a hierachically clustered heatmap and corresponding dendrogram of a transaction matrix
Usage
1 | hcl.heatmap.plot(monsterObj, method = "pearson")
|
Arguments
monsterObj |
monsterAnalysis Object |
method |
distance metric for hierarchical clustering. Default is "Pearson correlation" |
Value
ggplot2 object for transition matrix heatmap
Examples
1 2 3 4 5 | # data(yeast)
# design <- c(rep(0,20),rep(NA,10),rep(1,20))
# monsterRes <- monster(yeast$exp.cc, design, yeast$motif, nullPerms=100, numMaxCores=4)
data(monsterRes)
hcl.heatmap.plot(monsterRes)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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