pandaToyData: Toy gene expression, motif, and ppi data

Description Usage Format Value References

Description

This data is a list containing three data.frames. The motif data.frame describes a set of pairwise connections where a specific known sequence motif of a transcription factor was found upstream of the corresponding gene. The expression data.frame is a set of 1000 gene expression levels measured across 50 samples. Finally, the ppi data.frame describes a set of known pairwise protein interactions.

Usage

1

Format

A list containing 3 data.frames

Value

A list of length 3

References

Glass K, Huttenhower C, Quackenbush J, Yuan GC. Passing Messages Between Biological Networks to Refine Predicted Interactions. PLoS One. 2013 May 31;8(5):e64832.


QuackenbushLab/pandaR documentation built on May 9, 2017, 8:42 p.m.