pandaToyData: Toy gene expression, motif, and ppi data
In QuackenbushLab/pandaR: PANDA Algorithm
Description
Usage
Format
Value
References
Description
This data is a list containing three data.frames. The motif data.frame describes a set of pairwise connections where a specific known sequence motif of a transcription factor was found upstream of the corresponding gene. The expression data.frame is a set of 1000 gene expression levels measured across 50 samples. Finally, the ppi data.frame describes a set of known pairwise protein interactions.
Usage
1
Format
A list containing 3 data.frames
Value
A list of length 3
References
Glass K, Huttenhower C, Quackenbush J, Yuan GC. Passing Messages Between Biological Networks to Refine Predicted Interactions. PLoS One. 2013 May 31;8(5):e64832.
QuackenbushLab/pandaR documentation built on May 8, 2019, 3:49 a.m.
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Description Usage Format Value References
Description
This data is a list containing three data.frames. The motif data.frame describes a set of pairwise connections where a specific known sequence motif of a transcription factor was found upstream of the corresponding gene. The expression data.frame is a set of 1000 gene expression levels measured across 50 samples. Finally, the ppi data.frame describes a set of known pairwise protein interactions.
Usage
1 |
Format
A list containing 3 data.frames
Value
A list of length 3
References
Glass K, Huttenhower C, Quackenbush J, Yuan GC. Passing Messages Between Biological Networks to Refine Predicted Interactions. PLoS One. 2013 May 31;8(5):e64832.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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