plotGraph: Plot graph

In QuackenbushLab/pandaR: PANDA Algorithm

Description

plotGraph plots a bipartite graph

Usage

plotGraph(x)

Arguments

x	An incidence matrix describing a bipartite graph.

Examples

data(pandaToyData)
pandaRes <- panda(pandaToyData$motif,
           pandaToyData$expression,pandaToyData$ppi,hamming=.001,progress=TRUE)
topPandaRes <- topedges(pandaRes,1000)
subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))
plotGraph(subnet.pandaRes)

data(pandaResult)
topPandaRes <- topedges(pandaResult, 1000)
subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))
plotGraph(subnet.pandaRes)

QuackenbushLab/pandaR documentation built on May 8, 2019, 3:49 a.m.