targetedGenes: targetedGenes
In QuackenbushLab/pandaR: PANDA Algorithm
Description
Usage
Arguments
Value
Examples
Description
Gets a set of genes targeted by a specified transcription factor. This function can be applied to a graph that
is not complete, subsetting the edges which have non-zero edge weight. See function topEdges for dichotomizing edgeweights.
Usage
1
targetedGenes(x, tfs)
Arguments
x
an object of class "panda"
tfs
transcription factors to query
Value
A vector of targeted genes
Examples
1
2
3
4
5
6
7
8
data(pandaToyData)
pandaRes <- panda(pandaToyData$motif,
pandaToyData$expression,pandaToyData$ppi,hamming=.001)
topPandaRes <- topedges(pandaRes,1000)
targetedGenes(topPandaRes,c("AR","ELK1"))
data(pandaResult)
topPandaRes <- topedges(pandaResult,1000)
QuackenbushLab/pandaR documentation built on May 8, 2019, 3:49 a.m.
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Description Usage Arguments Value Examples
Description
Gets a set of genes targeted by a specified transcription factor. This function can be applied to a graph that is not complete, subsetting the edges which have non-zero edge weight. See function topEdges for dichotomizing edgeweights.
Usage
1 | targetedGenes(x, tfs)
|
Arguments
x |
an object of class "panda" |
tfs |
transcription factors to query |
Value
A vector of targeted genes
Examples
1 2 3 4 5 6 7 8 | data(pandaToyData)
pandaRes <- panda(pandaToyData$motif,
pandaToyData$expression,pandaToyData$ppi,hamming=.001)
topPandaRes <- topedges(pandaRes,1000)
targetedGenes(topPandaRes,c("AR","ELK1"))
data(pandaResult)
topPandaRes <- topedges(pandaResult,1000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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