importPandaMatlab: Panda Matlab importer

In QuackenbushLab/pandaR: PANDA Algorithm

Description

Imports the files from the exportPanda.m file.

Usage

importPandaMatlab(dir = getwd(), celldata = "celldata.dat")

Arguments

dir	Working directory to search for the numeric files.
celldata	Name of the 'celldata.dat' file.

Value

Two column vector of "regulator" and "target"

Examples

# determine gene degree
 pandaFiles = importPandaMatlab()
 indegree <- ddply(pandaFiles[,2:ncol(pandaFiles)], .(targer), numcolwise(sum))
 row.names(indegree) <- indegree[,1]
 indegree <- indegree[,-1]
 # to export the file
 networkfiles = list.files(pattern="numeric")
 write.table(indegree,paste("indegree_",networkfiles,sep=""),
             sep="\t",quote=F,row.names=T,col.names=T)

QuackenbushLab/pandaR documentation built on May 8, 2019, 3:49 a.m.