scratch/computing_cell_counts.R
In RGLab/COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells
library(COMPASS)
CC_subs <- subset(CC, Stim == "92TH023 Env")
n_s <- CellCounts(CC_subs)
CC_subu <- subset(CC, Stim == "negctrl 1")
n_u <- CellCounts(CC_subu)
## marginal counts
markers <- colnames(CC$data[[1]])
m_s <- CellCounts(CC_subs, list( 2, 4, c(2, 4) ))
RGLab/COMPASS documentation built on Feb. 11, 2021, 3:23 p.m.
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library(COMPASS)
CC_subs <- subset(CC, Stim == "92TH023 Env")
n_s <- CellCounts(CC_subs)
CC_subu <- subset(CC, Stim == "negctrl 1")
n_u <- CellCounts(CC_subu)
## marginal counts
markers <- colnames(CC$data[[1]])
m_s <- CellCounts(CC_subs, list( 2, 4, c(2, 4) ))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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