Files in RGLab/CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

.Rbuildignore

.github/ISSUE_TEMPLATE/bug_report.md

.github/workflows/build.yml

CONDUCT.md

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/AllClasses.R R/GatingSet2cytobank.R R/GatingSet2flowJo.R R/compensation.R R/cpp11.R R/cytobank2GatingSet.R R/cytobankExperiment.R R/cytolibml_bin_path.R

R/cytolibml_bin_path.R.in

R/diva2GatingSet.R R/flowJoWorkspace_Methods.R R/flowUtils_functions.R R/gate-methods.R R/gatingML.R R/graphGML_methods.R R/helperFunctions.R R/parameter-methods.R R/read.gatingML.cytobank.R R/transforms.R R/utils.R R/writeGatingML.R README.Rmd README.md

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_pkgdown.yml

configure

configure.ac

docs/404.html

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docs/articles/cytobank2GatingSet.html

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docs/articles/flowJo.png

docs/articles/index.html

docs/authors.html

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docs/pkgdown.css

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docs/pkgdown.yml

docs/reference/CytoML-deprecated.html

docs/reference/CytoML.par.get.html

docs/reference/CytoML.par.init.html

docs/reference/addCustomInfo.html

docs/reference/ce_get_compensations.html

docs/reference/ce_get_panels.html

docs/reference/ce_get_samples.html

docs/reference/ce_get_transformations.html

docs/reference/compensate-GatingSet-graphGML-method.html

docs/reference/constructTree.html

docs/reference/cytobank_experiment-methods.html

docs/reference/cytobank_to_gatingset.html

docs/reference/diva_get_sample_groups.html

docs/reference/diva_get_samples.html

docs/reference/diva_to_gatingset.html

docs/reference/diva_workspace-class.html

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docs/reference/extend.html

docs/reference/fj_ws_get_keywords.html

docs/reference/fj_ws_get_sample_groups.html

docs/reference/fj_ws_get_samples.html

docs/reference/flowjo_to_gatingset.html

docs/reference/flowjo_workspace-class.html

docs/reference/gating-methods.html

docs/reference/gatingset_to_cytobank.html

docs/reference/gatingset_to_flowjo.html

docs/reference/getChildren-graphGML-character-method.html

docs/reference/getCompensationMatrices.graphGML.html

docs/reference/getGate-graphGML-character-method.html

docs/reference/getNodes-graphGML-method.html

docs/reference/getParent-graphGML-character-method.html

docs/reference/getTransformations.graphGML.html

docs/reference/graphGML-class.html

docs/reference/gs_compare_cytobank_counts.html

docs/reference/index.html

docs/reference/matchPath.html

docs/reference/open_cytobank_experiment.html

docs/reference/open_diva_xml.html

docs/reference/open_flowjo_xml.html

docs/reference/parse.gateInfo.html

docs/reference/plot-graphGML-missing-method.html

docs/reference/range.GatingHierarchy.html

docs/reference/read.gatingML.cytobank.html

docs/reference/show-graphGML-method.html

inst/CITATION

inst/cppTest/unitTest/gatingSet_test.cpp

inst/cppTest/unitTest/testSuite.cpp

inst/cppTest/unitTest/test_header.hpp

inst/defaults.xml

inst/extdata/cytobank_experiment.acs

inst/extdata/cytotrol_tcell_cytobank_logt_counts.csv

inst/extdata/logtGml.xml

inst/extdata/winlist.wlx

inst/include/CytoML/flowJoWorkspace.hpp

inst/include/CytoML/macFlowJoWorkspace.hpp

inst/include/CytoML/openWorkspace.hpp

inst/include/CytoML/search_sample.hpp

inst/include/CytoML/winFlowJoWorkspace.hpp

inst/include/CytoML/workspace.hpp

inst/include/CytoML/workspace_type.hpp

inst/include/CytoML/wsNode.hpp

inst/schema/CytoML.v1.0.xsd

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man-roxygen/template-depr_fun.R man-roxygen/template-depr_pkg.R man/CytoML-deprecated.Rd man/addCustomInfo.Rd man/ce_get_channels.Rd man/ce_get_compensations.Rd man/ce_get_markers.Rd man/ce_get_panels.Rd man/ce_get_samples.Rd man/ce_get_transformations.Rd man/compensate-GatingSet-graphGML-method.Rd man/constructTree.Rd man/cytobank_experiment-methods.Rd man/cytobank_to_gatingset.Rd man/diva_get_samples.Rd man/diva_to_gatingset.Rd man/diva_workspace-class.Rd man/extend.Rd man/fj_ws_get_keywords.Rd man/fj_ws_get_sample_groups.Rd man/fj_ws_get_samples.Rd man/flowjo_to_gatingset.Rd man/flowjo_workspace-class.Rd man/gatingset_to_cytobank.Rd man/gatingset_to_flowjo.Rd man/getChildren-graphGML-character-method.Rd man/getCompensationMatrices.graphGML.Rd man/getGate-graphGML-character-method.Rd man/getNodes-graphGML-method.Rd man/getParent-graphGML-character-method.Rd man/getTransformations.graphGML.Rd man/graphGML-class.Rd man/gs_compare_cytobank_counts.Rd man/matchPath.Rd man/open_cytobank_experiment.Rd man/open_diva_xml.Rd man/open_flowjo_xml.Rd man/parse.gateInfo.Rd man/plot-graphGML-missing-method.Rd man/range.GatingHierarchy.Rd man/read.gatingML.cytobank.Rd man/show-graphGML-method.Rd

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src/CytoML_types.h

src/Makevars.in

src/Makevars.ucrt

src/Makevars.win

src/cpp11.cpp

src/parseFlowJoWorkspace.cpp

tests/testthat.R tests/testthat/Cytobank2GatingSet-InternalTestSuite.R tests/testthat/GatingSet2flowJo-InternalTestSuite.R tests/testthat/diva2gs-InternalTestSuite.R

tests/testthat/expect_result/flowJoWorkspace_expect.rds

tests/testthat/flowJoWorkspace-testSuite.R tests/testthat/flowjo2gs_internalTestSuite.R tests/testthat/helper-lib.R tests/testthat/test-GatingSet2flowJo.R tests/testthat/test-cytobank.R tests/testthat/test-diva2gs.R tests/testthat/test-extend.R tests/testthat/test-flowjo2gs.R tests/testthat/test-internal-suite.R tools/winlibs.R vignettes/HowToExportGatingSet.Rmd

vignettes/HowToParseGatingML.html

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vignettes/cytobank2GatingSet.Rmd

vignettes/flowJo.png

vignettes/flowjo_to_gatingset.Rmd

RGLab/CytoML documentation built on Feb. 1, 2024, 12:34 a.m.