read.gatingML.cytobank: Parser for gatingML exported by Cytobank

In RGLab/CytoML: A GatingML Interface for Cross Platform Cytometry Data Sharing

Parser for gatingML exported by Cytobank

Description

The Default parser (read.gatingML) does not parse the population tree as well as the custom information from cytobank. (e.g. gate name, fcs filename).

Usage

read.gatingML.cytobank(file, ...)

Arguments

file	Gating-ML XML file
...	additional arguments passed to the handlers of 'xmlTreeParse'

Value

a graphGML that represents the population tree. The gate and population name are stored in nodeData of each node. Compensation and transformations are stored in graphData.

Examples

## Not run: 
g <- read.gatingML.cytobank(xml) #parse the population tree
#plot(g) #visualize it

## End(Not run)

RGLab/CytoML documentation built on Feb. 1, 2024, 12:34 a.m.