plot-graphGML-missing-method: plot the population tree stored in graphGML.

In RGLab/CytoML: A GatingML Interface for Cross Platform Cytometry Data Sharing

plot the population tree stored in graphGML.

Description

The node with dotted order represents the population that has tailored gates (sample-specific gates) defined.

Usage

## S4 method for signature 'graphGML,missing'
plot(x, y = "missing", label = c("popName", "gateName"))

Arguments

x	a graphNEL generated by constructTree function
y	not used
label	specifies what to be dispaled as node label. Can be either 'popName' (population name parsed from GateSets) or 'gateName'(the name of the actual gate associated with each node)

Value

nothing

Examples

## Not run: 
g <- read.gatingML.cytobank(xmlfile)
plot(g)

## End(Not run)

RGLab/CytoML documentation built on Feb. 1, 2024, 12:34 a.m.