quadratic-class: Class "quadratic"

In RGLab/flowCore: flowCore: Basic structures for flow cytometry data

Class "quadratic"

Description

Quadratic transform class which represents a transformation defined by the function

f(parameter,a)=a*parameter^2

Slots

.Data

Object of class "function".

a

Object of class "numeric" – non-zero multiplicative constant.

parameters

Object of class "transformation" – flow parameter to be transformed.

transformationId

Object of class "character" – unique ID to reference the transformation.

Objects from the Class

Objects can be created by calls to the constructor quadratic(parameters,a,transformationId)

Extends

Class "singleParameterTransform", directly.

Class "transform", by class "singleParameterTransform", distance 2.

Class "transformation", by class "singleParameterTransform", distance 3.

Class "characterOrTransformation", by class "singleParameterTransform", distance 4.

Note

The quadratic transformation object can be evaluated using the eval method by passing the data frame as an argument.The transformed parameters are returned as a column vector. (See example below)

Author(s)

Gopalakrishnan N, F.Hahne

References

Gating-ML Candidate Recommendation for Gating Description in Flow Cytometry V 1.5

See Also

dg1polynomial,ratio,squareroot

Other mathematical transform classes: EHtrans-class, asinht-class, asinhtGml2-class, dg1polynomial-class, exponential-class, hyperlog-class, hyperlogtGml2-class, invsplitscale-class, lintGml2-class, logarithm-class, logicletGml2-class, logtGml2-class, ratio-class, ratiotGml2-class, sinht-class, splitscale-class, squareroot-class, unitytransform-class

Examples

  dat <- read.FCS(system.file("extdata","0877408774.B08",
  package="flowCore"))
  quad1<-quadratic(parameters="FSC-H",a=2,transformationId="quad1")
  transOut<-eval(quad1)(exprs(dat))

RGLab/flowCore documentation built on Aug. 26, 2024, 8:52 a.m.