Files in RGLab/flowCore

flowCore: Basic structures for flow cytometry data

.Rbuildignore

.github/issue_template.md

.github/workflows/build.yml

.travis.yml

DESCRIPTION

NAMESPACE

NEWS.md R/AllClasses.R R/AllGenerics.R R/CytoExploreR_wrappers.R R/FCSTransTransform.R R/GvHD.R R/IO.R R/coerce.R R/cpp11.R R/eval-methods.R R/filterResult-accessors.R R/filterResultList-accessors.R R/filterSummary-accessors.R R/flowCore.R R/flowFrame-accessors.R R/flowSet-accessors.R R/gatingML.R R/identifier-methods.R R/in-methods.R R/initialize-methods.R R/length-methods.R R/logicalFilterResult-accessors.R R/manyFilterResult-accessors.R R/median-logicle-transform.R R/multipleFilterResult-accessors.R R/names-methods.R R/on-methods.R R/parameters-methods.R R/rectangleGate-accessors.R R/show-methods.R R/split-methods.R R/summarizeFilter-methods.R R/summary-methods.R R/transformList-accessors.R R/transform_gate-methods.R R/utils.R README.md

_pkgdown.yml

data/GvHD.rda

docs/404.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/issue_template.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/CytoExploreR_exports.html

docs/reference/EHtrans-class.html

docs/reference/FCSTransTransform.html

docs/reference/GvHD.html

docs/reference/Subset-methods.html

docs/reference/arcsinhTransform.html

docs/reference/asinht-class.html

docs/reference/asinhtGml2-class.html

docs/reference/biexponentialTransform-1.png

docs/reference/biexponentialTransform.html

docs/reference/boundaryFilter-class.html

docs/reference/characterOrNumeric-class.html

docs/reference/characterOrParameters-class.html

docs/reference/characterOrTransformation-class.html

docs/reference/checkOffset.html

docs/reference/coerce.html

docs/reference/collapse_desc.html

docs/reference/compensatedParameter-class.html

docs/reference/compensation-class.html

docs/reference/complementFilter-class.html

docs/reference/concreteFilter-class.html

docs/reference/decompensate-methods.html

docs/reference/decompensate.html

docs/reference/dg1polynomial-class.html

docs/reference/each_col.html

docs/reference/ellipsoidGate-class.html

docs/reference/estimateMedianLogicle.html

docs/reference/exponential-class.html

docs/reference/expressionFilter-class.html

docs/reference/filter-and-methods.html

docs/reference/filter-class.html

docs/reference/filter-in-methods.html

docs/reference/filter-methods.html

docs/reference/filter-on-methods.html

docs/reference/filterDetails-methods.html

docs/reference/filterList-class.html

docs/reference/filterReference-class.html

docs/reference/filterResult-class.html

docs/reference/filterResultList-class.html

docs/reference/filterSummary-class.html

docs/reference/filterSummaryList-class.html

docs/reference/filter_keywords.html

docs/reference/filters-class.html

docs/reference/flowCore-package.html

docs/reference/flowFrame-class-1.png

docs/reference/flowFrame-class-2.png

docs/reference/flowFrame-class-3.png

docs/reference/flowFrame-class-4.png

docs/reference/flowFrame-class-5.png

docs/reference/flowFrame-class.html

docs/reference/flowSet-class-1.png

docs/reference/flowSet-class.html

docs/reference/flowSet_to_list.html

docs/reference/fr_append_cols.html

docs/reference/fsApply.html

docs/reference/getChannelMarker.html

docs/reference/getIndexSort-methods.html

docs/reference/getIndexSort.html

docs/reference/hyperlog-class.html

docs/reference/hyperlogtGml2-class.html

docs/reference/identifier-methods.html

docs/reference/index.html

docs/reference/intersectFilter-class.html

docs/reference/inverseLogicleTransform.html

docs/reference/invsplitscale-class.html

docs/reference/keyword-methods.html

docs/reference/kmeansFilter-class.html

docs/reference/linearTransform.html

docs/reference/lintGml2-class.html

docs/reference/lnTransform-1.png

docs/reference/lnTransform.html

docs/reference/logTransform.html

docs/reference/logarithm-class.html

docs/reference/logicalFilterResult-class.html

docs/reference/logicleTransform.html

docs/reference/logicletGml2-class.html

docs/reference/logtGml2-class.html

docs/reference/manyFilterResult-class.html

docs/reference/markernames.html

docs/reference/multipleFilterResult-class.html

docs/reference/normalization-class.html

docs/reference/nullParameter-class.html

docs/reference/parameterFilter-class.html

docs/reference/parameterTransform-class.html

docs/reference/parameters-class.html

docs/reference/parameters-methods.html

docs/reference/polygonGate-class.html

docs/reference/polytopeGate-class.html

docs/reference/quadGate-class.html

docs/reference/quadratic-class.html

docs/reference/quadraticTransform.html

docs/reference/randomFilterResult-class.html

docs/reference/ratio-class.html

docs/reference/ratiotGml2-class.html

docs/reference/read.FCS.html

docs/reference/read.FCSheader.html

docs/reference/read.flowSet.html

docs/reference/rectangleGate-class.html

docs/reference/rotate_gate.html

docs/reference/sampleFilter-class.html

docs/reference/scaleTransform.html

docs/reference/scale_gate.html

docs/reference/setOperationFilter-class.html

docs/reference/shift_gate.html

docs/reference/singleParameterTransform-class.html

docs/reference/sinht-class.html

docs/reference/split-methods.html

docs/reference/splitScaleTransform-1.png

docs/reference/splitScaleTransform.html

docs/reference/splitscale-class.html

docs/reference/squareroot-class.html

docs/reference/subsetFilter-class.html

docs/reference/summarizeFilter-methods.html

docs/reference/timeFilter-class-1.png

docs/reference/timeFilter-class.html

docs/reference/transform-class.html

docs/reference/transform.html

docs/reference/transformFilter-class.html

docs/reference/transformList-class.html

docs/reference/transformMap-class.html

docs/reference/transformReference-class.html

docs/reference/transform_gate.html

docs/reference/transformation-class.html

docs/reference/truncateTransform.html

docs/reference/unionFilter-class.html

docs/reference/unitytransform-class.html

docs/reference/updateTransformKeywords.html

docs/reference/validFilters.html

docs/reference/write.FCS.html

docs/reference/write.flowSet.html

examples/example1.r examples/example2.R

inst/doc/fcs3.html

inst/doc/hyperlog.notice.html

inst/extdata/0877408774.B08

inst/extdata/0877408774.E07

inst/extdata/0877408774.F06

inst/extdata/compdata/comp_match

inst/extdata/compdata/compmatrix

inst/extdata/compdata/compref

inst/extdata/compdata/compref1

inst/extdata/compdata/compref2

inst/extdata/compdata/compref3

inst/extdata/compdata/compref4

inst/extdata/compdata/data/060909.001

inst/extdata/compdata/data/060909.002

inst/extdata/compdata/data/060909.003

inst/extdata/compdata/data/060909.004

inst/extdata/compdata/data/060909.005

man/CytoExploreR_exports.Rd man/EHtrans-class.Rd man/FCSTransTransform.Rd man/GvHD.Rd man/Subset-methods.Rd man/arcsinhTransform.Rd man/asinht-class.Rd man/asinhtGml2-class.Rd man/biexponentialTransform.Rd man/boundaryFilter-class.Rd man/characterOrNumeric-class.Rd man/characterOrParameters-class.Rd man/characterOrTransformation-class.Rd man/checkOffset.Rd man/coerce.Rd man/collapse_desc.Rd man/compensatedParameter-class.Rd man/compensation-class.Rd man/complementFilter-class.Rd man/concreteFilter-class.Rd man/decompensate.Rd man/dg1polynomial-class.Rd man/each_col.Rd man/ellipsoidGate-class.Rd man/estimateMedianLogicle.Rd man/exponential-class.Rd man/expressionFilter-class.Rd man/filter-and-methods.Rd man/filter-class.Rd man/filter-in-methods.Rd man/filter-methods.Rd man/filter-on-methods.Rd man/filterDetails-methods.Rd man/filterList-class.Rd man/filterReference-class.Rd man/filterResult-class.Rd man/filterResultList-class.Rd man/filterSummary-class.Rd man/filterSummaryList-class.Rd man/filters-class.Rd man/flowCore-package.Rd man/flowFrame-class.Rd man/flowSet-class.Rd man/flowSet_to_list.Rd man/fr_append_cols.Rd man/fsApply.Rd man/getChannelMarker.Rd man/getIndexSort.Rd man/hyperlog-class.Rd man/hyperlogtGml2-class.Rd man/identifier-methods.Rd man/intersectFilter-class.Rd man/inverseLogicleTransform.Rd man/invsplitscale-class.Rd man/keyword-methods.Rd man/kmeansFilter-class.Rd man/linearTransform.Rd man/lintGml2-class.Rd man/lnTransform.Rd man/logTransform.Rd man/logarithm-class.Rd man/logicalFilterResult-class.Rd man/logicleTransform.Rd man/logicletGml2-class.Rd man/logtGml2-class.Rd man/manyFilterResult-class.Rd man/markernames.Rd man/multipleFilterResult-class.Rd man/normalization-class.Rd man/nullParameter-class.Rd man/parameterFilter-class.Rd man/parameterTransform-class.Rd man/parameters-class.Rd man/parameters-methods.Rd man/polygonGate-class.Rd man/polytopeGate-class.Rd man/quadGate-class.Rd man/quadratic-class.Rd man/quadraticTransform.Rd man/randomFilterResult-class.Rd man/ratio-class.Rd man/ratiotGml2-class.Rd man/read.FCS.Rd man/read.FCSheader.Rd man/read.flowSet.Rd man/rectangleGate-class.Rd man/rotate_gate.Rd man/sampleFilter-class.Rd man/scaleTransform.Rd man/scale_gate.Rd man/setOperationFilter-class.Rd man/shift_gate.Rd man/singleParameterTransform-class.Rd man/sinht-class.Rd man/split-methods.Rd man/splitScaleTransform.Rd man/splitscale-class.Rd man/squareroot-class.Rd man/subsetFilter-class.Rd man/summarizeFilter-methods.Rd man/timeFilter-class.Rd man/transform-class.Rd man/transform.Rd man/transformFilter-class.Rd man/transformList-class.Rd man/transformMap-class.Rd man/transformReference-class.Rd man/transform_gate.Rd man/transformation-class.Rd man/truncateTransform.Rd man/unionFilter-class.Rd man/unitytransform-class.Rd man/updateTransformKeywords.Rd man/validFilters.Rd man/write.FCS.Rd man/write.flowSet.Rd

paper/Figure1-flowCoreFrameWork.jpg

paper/Figure1.ppt

paper/Figure2-flowWheel-version4.jpg

paper/bmc_article.bib

paper/bmc_article.bst

paper/bmc_article.cls

paper/bmc_article.tex

paper/figure.R

paper/flowCoreRef.bib

paper/flowQ.jpg

paper/manuscript.tex

paper/outline.tex

paper/response2reviewers.rtf

paper/xyplot.pdf

src/FastLogicle.cpp

src/Hyperlog.cpp

src/Logicle.cpp

src/Makevars

src/Makevars.ucrt

src/Makevars.win

src/biexponential.cpp

src/convertRawBytes.cpp

src/convertRawBytes.h

src/cpp11.cpp

src/fcsTextParse.cpp

src/flowCore_types.h

src/hyperlog.h

src/hyperlogTransform.cpp

src/inPolygon.cpp

src/inPolytope.cpp

src/logicle.h

src/logicleTransform.cpp

src/poly_centroid.cpp

src/sortBytes.cpp

src/uint2double.cpp

src/zeroin.cpp

src/zeroin.h

tests/testthat.R

tests/testthat/expectRes.new.rds

tests/testthat/expectResults.rds

tests/testthat/helper-expectResults.R

tests/testthat/ref_flowframes.rds

tests/testthat/test-IO-internal.R tests/testthat/test-IO.R tests/testthat/test-classes.R tests/testthat/test-colnames.R tests/testthat/test-convertRawBytes.R tests/testthat/test-fcsTextParse.R tests/testthat/test-filter.R tests/testthat/test-fr-methods.R tests/testthat/test-gating.R tests/testthat/test-markernames.R tests/testthat/test-paramMatch.R tests/testthat/test-sortBytes.R tests/testthat/test-transform.R tests/testthat/test-transform_gate.R

vignettes/HowTo-flowCore.Rnw

vignettes/cytoref.bib

RGLab/flowCore documentation built on Aug. 26, 2024, 8:52 a.m.