API for RajLabMSSM/catalogueR
QTL data extraction and colocalization
| Global functions | |
|---|---|
| COLOC.report_summary | Source code |
| COLOC_corplot | Man page Source code |
| COLOC_get_example_res | Man page Source code |
| COLOC_get_res | Man page Source code |
| COLOC_heatmap | Man page Source code |
| COLOC_merge_res | Man page Source code |
| COLOC_plot_data | Source code |
| COLOC_plot_loci | Man page Source code |
| COLOC_report_summary | Man page Source code |
| COLOC_run | Man page Source code |
| COLOC_save_plot | Source code |
| catalogueR | Man page |
| catalogueR-package | Man page |
| check_coord_input | Man page Source code |
| check_dim | Man page Source code |
| check_maf | Man page Source code |
| check_missing_queries | Source code |
| check_sample_size | Source code |
| choose_quant_method | Source code |
| construct_locus_name | Source code |
| eQTL_Catalogue.annotate_tissues | Source code |
| eQTL_Catalogue.fetch | Source code |
| eQTL_Catalogue.iterate_fetch | Source code |
| eQTL_Catalogue.list_datasets | Source code |
| eQTL_Catalogue.query | Source code |
| eQTL_Catalogue.search_metadata | Source code |
| eQTLcatalogue_annotate_tissues | Man page Source code |
| eQTLcatalogue_example_queries | Man page Source code |
| eQTLcatalogue_example_queries_local | Source code |
| eQTLcatalogue_fetch | Man page Source code |
| eQTLcatalogue_get_header | Source code |
| eQTLcatalogue_header | Man page |
| eQTLcatalogue_iterate_fetch | Man page Source code |
| eQTLcatalogue_list_datasets | Man page Source code |
| eQTLcatalogue_query | Man page Source code |
| eQTLcatalogue_search_metadata | Man page Source code |
| ensembl_to_hgnc | Man page Source code |
| example_eQTL_Catalogue_query_paths | Source code |
| fetch_from_eqtl_cat_API | Man page Source code |
| fetch_restAPI | Man page Source code |
| fetch_tabix | Man page Source code |
| fix_ftp | Source code |
| gather_colocalized_data | Source code |
| gather_files | Source code |
| get_coloc_QTLs | Source code |
| get_colocs | Source code |
| hgnc_to_ensembl | Man page Source code |
| make_split_path | Source code |
| max_file_size | Source code |
| merge_files | Man page Source code |
| merge_gwas_qtl | Man page Source code |
| message_parallel | Source code |
| messager | Source code |
| meta | Man page |
| multi_locus_plot | Source code |
| multithread_handler | Source code |
| multithread_optimizer | Source code |
| parse_gwas.qtl_path | Source code |
| plot_coloc_summary | Source code |
| reconstruct_file_names | Source code |
| run_coloc | Source code |
| timeit | Source code |
