meta: eQTL Catalogue dataset metadata

In RajLabMSSM/catalogueR: QTL data extraction and colocalization

eQTL Catalogue dataset metadata

Description

List of all queryable tabix-indexed eQTL Catalogue datasets and their associated systems/tissues/cell types.

Usage

meta

Format

An object of class data.table (inherits from data.frame) with 503 rows and 12 columns.

Source

meta <- eQTLcatalogue_list_datasets(force_new = TRUE) # Some paths in the metadata were originally wrong. # Has since been corrected by authors. # meta <- meta |> dplyr::mutate(ftp_path= gsub("Fairfax_2014_monocyte", # "Fairfax_2014",ftp_path)) usethis::use_data(meta, overwrite = TRUE)

See Also

Other eQTL Catalogue: eQTLcatalogue_fetch(), eQTLcatalogue_header, eQTLcatalogue_iterate_fetch(), eQTLcatalogue_query(), eQTLcatalogue_search_metadata(), fetch_restAPI(), fetch_tabix(), merge_gwas_qtl()

RajLabMSSM/catalogueR documentation built on Jan. 1, 2023, 10:45 a.m.