eQTLcatalogue_list_datasets: List available eQTL datasets

In RajLabMSSM/catalogueR: QTL data extraction and colocalization

List available eQTL datasets

Description

Does some additional preprocessing of metadata to categorize tissue types.

Usage

eQTLcatalogue_list_datasets(
  save_dir = tempdir(),
  force_new = FALSE,
  include_imported = TRUE,
  verbose = FALSE
)

Arguments

save_dir	Where to save the processed metadata.
force_new	Re-import the metadata from GitHub instead of using metadata that comes included with catalogueR.
include_imported	Include metadata from datasets that have not yet been fully re-processed by eQTL Catalogue's standardized pipeline.
verbose	Print messages.

Source

eQTL-Catalogue GitHub repo

Examples

meta <- catalogueR::eQTLcatalogue_list_datasets()

RajLabMSSM/catalogueR documentation built on Jan. 1, 2023, 10:45 a.m.