View source: R/COLOC_merge_res.R
COLOC_merge_res | R Documentation |
Use the coloc results (coloc_QTLs) to determine which full summary stats (gwas.qtl_paths) to plot.
COLOC_merge_res( gwas.qtl_paths, coloc_QTLs = NULL, qtl_thresh = 1e-05, coloc_thresh = 0.8, gwas_label = "GWAS", remove_extra_panes = TRUE, verbose = TRUE )
gwas.qtl_paths |
Query results paths from eQTLcatalogue_query. |
coloc_QTLs |
Colocalization results from COLOC_run. |
qtl_thresh |
QTL uncorrected p-value ("pvalues.QTL") threshold. |
coloc_thresh |
Colocalization Posterior Probability threshold,
using the formula:
|
gwas_label |
Label for the GWAS subplot. |
remove_extra_panes |
Remove SNPs from non-significant panes. |
verbose |
Print messages. |
Other coloc:
COLOC_corplot()
,
COLOC_get_example_res()
,
COLOC_get_res()
,
COLOC_heatmap()
,
COLOC_report_summary()
,
COLOC_run()
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