eQTLcatalogue_annotate_tissues: Annotate QTL datasets with metadata

In RajLabMSSM/catalogueR: QTL data extraction and colocalization

Annotate QTL datasets with metadata

Description

Annotate QTL datasets from eQTL Catalogue with metadata.

Usage

eQTLcatalogue_annotate_tissues(dat, add_tissue_counts = FALSE)

Arguments

dat	data.table of query results from eQTLcatalogue_example_queries.
add_tissue_counts	Add a new column "Tissue_count" summarizing the number of datasets per tissue.

Examples

paths <- catalogueR::eQTLcatalogue_example_queries(
    fnames = "BST1__Alasoo_2018.macrophage_IFNg+Salmonella.tsv.gz")
dat <- data.table::fread(paths[1], nThread = 1)
dat_annot <- catalogueR::eQTLcatalogue_annotate_tissues(dat = dat)

RajLabMSSM/catalogueR documentation built on Jan. 1, 2023, 10:45 a.m.