Files in RajLabMSSM/catalogueR

QTL data extraction and colocalization

.DS_Store

.Rbuildignore

.github/.gitignore

.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md

.github/workflows/rworkflows.yml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md

R/.DS_Store

R/COLOC_corplot.R R/COLOC_get_example_res.R R/COLOC_get_res.R R/COLOC_heatmap.R R/COLOC_merge_res.R R/COLOC_plot_data.R R/COLOC_plot_loci.R R/COLOC_report_summary.R R/COLOC_run.R R/COLOC_save_plot.R R/check_coord_input.R R/check_dim.R R/check_maf.R R/check_missing_queries.R R/check_sample_size.R R/choose_quant_method.R R/construct_locus_name.R R/data.R R/eQTLcatalogue_annotate_tissues.R R/eQTLcatalogue_example_queries.R R/eQTLcatalogue_example_queries_local.R R/eQTLcatalogue_fetch.R R/eQTLcatalogue_get_header.R R/eQTLcatalogue_iterate_fetch.R R/eQTLcatalogue_list_datasets.R R/eQTLcatalogue_query.R R/eQTLcatalogue_search_metadata.R R/ensembl_to_hgnc.R R/fetch_from_eqtl_cat_API.R R/fetch_restAPI.R R/fetch_tabix.R R/fix_ftp.R R/hgnc_to_ensembl.R R/make_split_path.R R/max_file_size.R R/merge_files.R R/merge_gwas_qtl.R R/message_parallel.R R/messager.R R/multithread_handler.R R/multithread_optimizer.R R/package.R R/parse_gwas.qtl_path.R R/reconstruct_file_names.R R/timeit.R README.Rmd README.md

catalogueR.Rproj

data/.DS_Store

data/eQTLcatalogue_header.rda

data/meta.rda

inst/.DS_Store

inst/CITATION

inst/conda/catalogueR.yml

inst/hex/.DS_Store

inst/hex/hex.png

inst/hex/hexSticker.Rmd man/COLOC_corplot.Rd man/COLOC_get_example_res.Rd man/COLOC_get_res.Rd man/COLOC_heatmap.Rd man/COLOC_merge_res.Rd man/COLOC_plot_loci.Rd man/COLOC_report_summary.Rd man/COLOC_run.Rd man/catalogueR-package.Rd man/check_coord_input.Rd man/check_dim.Rd man/check_maf.Rd man/eQTLcatalogue_annotate_tissues.Rd man/eQTLcatalogue_example_queries.Rd man/eQTLcatalogue_fetch.Rd man/eQTLcatalogue_header.Rd man/eQTLcatalogue_iterate_fetch.Rd man/eQTLcatalogue_list_datasets.Rd man/eQTLcatalogue_query.Rd man/eQTLcatalogue_search_metadata.Rd man/ensembl_to_hgnc.Rd man/fetch_from_eqtl_cat_API.Rd man/fetch_restAPI.Rd man/fetch_tabix.Rd man/hgnc_to_ensembl.Rd man/merge_files.Rd man/merge_gwas_qtl.Rd man/meta.Rd tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/test-COLOC_plot_summary.R tests/testthat/test-COLOC_run.R tests/testthat/test-eQTLcatalogue_fetch.R tests/testthat/test-eQTLcatalogue_query.R vignettes/catalogueR.Rmd vignettes/colocalize.Rmd

RajLabMSSM/catalogueR documentation built on Jan. 1, 2023, 10:45 a.m.