API for RajLabMSSM/echoLD
echoverse module: LD downloading and processing
| Global functions | |
|---|---|
| .onLoad | Source code |
| LD_reference_options | Source code |
| UKB_find_ld_prefix | Source code |
| check_LD_reference_1kg | Source code |
| check_population_1kg | Man page Source code |
| clean_UKB_tmps | Source code |
| compute_LD | Man page Source code |
| compute_LD_blocks | Man page Source code |
| download_UKB_LD | Man page Source code |
| fill_NA | Man page Source code |
| filter_LD | Man page Source code |
| get_1KG_url | Source code |
| get_LD | Man page Source code |
| get_LD_1KG | Man page Source code |
| get_LD_1KG_download_vcf | Man page Source code |
| get_LD_UKB | Man page Source code |
| get_LD_blocks | Man page Source code |
| get_LD_matrix | Man page Source code |
| get_LD_vcf | Man page Source code |
| get_MAF_UKB | Man page Source code |
| get_lead_r2 | Man page Source code |
| get_leadsnp_block | Man page Source code |
| get_locus_vcf_folder | Man page Source code |
| get_rds_path | Source code |
| is_sparse_matrix | Source code |
| ldlinkr_ldproxy_batch | Man page Source code |
| load_ld_r | Source code |
| load_or_create | Source code |
| message_parallel | Man page Source code |
| messager | Source code |
| plot_LD | Man page Source code |
| popDat_1KGphase1 | Man page |
| popDat_1KGphase3 | Man page |
| r2_to_r | Man page Source code |
| rds_to_npz | Man page Source code |
| readSparse | Man page Source code |
| read_LD_list | Man page Source code |
| report_time | Man page Source code |
| saveSparse | Man page Source code |
| save_LD_matrix | Man page Source code |
| select_vcf_samples | Man page Source code |
| snpstats_ensure_nonduplicates | Source code |
| snpstats_get_MAF | Man page Source code |
| source_all | Man page Source code |
| subset_common_snps | Man page Source code |
| to_sparse | Man page Source code |
| vcf_to_plink | Man page Source code |
