|addMtGeneLabel||Set gene names for bp ranges. Original code by Stephen Turner...|
|atacPairedEnd||pull in (filter and assemble as an object) some or all of the...|
|ATACseeker-package||A short title line describing what the package does|
|callMT||call mitochondrial variants from the results of...|
|collectStats||collect various cross-correlation and window size stats for...|
|fragPlot||Plot fragment size density for a set of samples.|
|getComplexity||complexity estimates from a GAlignmentPairs object, formatted...|
|getEsts||Complexity estimation for ATACseq libraries.|
|getFeatureCounts||for getComplexity and preseqR|
|getMT||grab the mitochondrial reads from a BAM and estimate their...|
|getQC||obtain QC information used by csaw from paired-end BAM files|
|hello||A simple function doing little|
|plotComplexity||plot results from preseq (complexity estimation around...|
|plotMT||plot mitochondrial variant calls in the context of...|
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