Man pages for RamsinghLab/ATACseeker
Utilities for ATACseq QC, differential accessibility, and integration

addMtGeneLabelSet gene names for bp ranges. Original code by Stephen Turner...
atacPairedEndpull in (filter and assemble as an object) some or all of the...
ATACseeker-packageA short title line describing what the package does
callMTcall mitochondrial variants from the results of...
collectStatscollect various cross-correlation and window size stats for...
fragPlotPlot fragment size density for a set of samples.
getComplexitycomplexity estimates from a GAlignmentPairs object, formatted...
getEstsComplexity estimation for ATACseq libraries.
getFeatureCountsfor getComplexity and preseqR
getMTgrab the mitochondrial reads from a BAM and estimate their...
getQCobtain QC information used by csaw from paired-end BAM files
helloA simple function doing little
plotComplexityplot results from preseq (complexity estimation around...
plotMTplot mitochondrial variant calls in the context of...
RamsinghLab/ATACseeker documentation built on Aug. 12, 2017, 11:16 p.m.