processUcscCytoband: utility function to pull in UCSC cytoband / arm files this is...
In RamsinghLab/ATACseeker: Utilities for ATACseq QC, differential accessibility, and integration
Description
Usage
Arguments
Value
Description
utility function to pull in UCSC cytoband / arm files
this is then applied to the mcols() of a GRanges or GAlignmentPairs
and then one can trivially parallelize over cytobands or arms with split()
Usage
1
processUcscCytoband(filename)
Arguments
filename
the UCSC cytoband file
Value
a GRanges with $chrArm and $chrBand as mcols
RamsinghLab/ATACseeker documentation built on May 8, 2019, 8:05 a.m.
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Description Usage Arguments Value
Description
utility function to pull in UCSC cytoband / arm files this is then applied to the mcols() of a GRanges or GAlignmentPairs and then one can trivially parallelize over cytobands or arms with split()
Usage
1 | processUcscCytoband(filename)
|
Arguments
filename |
the UCSC cytoband file |
Value
a GRanges with $chrArm and $chrBand as mcols
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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