plotMT: plot mitochondrial variant calls in the context of...
In RamsinghLab/ATACseeker: Utilities for ATACseq QC, differential accessibility, and integration
Description
Usage
Arguments
Details
Value
Description
use a plot (inspired by the original, which was written by Stephen Turner)
to visualize mitochondrial heteroplasmy from mitochondrial variant calls
Usage
1
Arguments
mtCalls
a VRanges object with variant calls and associated VAFs
filterVAF
filter low-quality and 0 or 1 VAF calls? (TRUE)
rot
plot counterclockwise (-1, default) or clockwise (1)?
title
a title for the plot (NULL)
Details
by default, calls with a VAF of 0 or 1 are excluded, but this can be changed
Value
a ggplot object
RamsinghLab/ATACseeker documentation built on May 8, 2019, 8:05 a.m.
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Description Usage Arguments Details Value
Description
use a plot (inspired by the original, which was written by Stephen Turner) to visualize mitochondrial heteroplasmy from mitochondrial variant calls
Usage
1 |
Arguments
mtCalls |
a VRanges object with variant calls and associated VAFs |
filterVAF |
filter low-quality and 0 or 1 VAF calls? (TRUE) |
rot |
plot counterclockwise (-1, default) or clockwise (1)? |
title |
a title for the plot (NULL) |
Details
by default, calls with a VAF of 0 or 1 are excluded, but this can be changed
Value
a ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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