tssQcPlot: what you would expect. not terribly novel; maybe use...

In RamsinghLab/ATACseeker: Utilities for ATACseq QC, differential accessibility, and integration

Description

what you would expect. not terribly novel; maybe use esATAC's instead? FIXME: generalize this to handle CTCF/TSS plots, etc. according to genome(x)

Usage

tssQcPlot(x, anno, ordering, span = 5000, smoothing = 50, ...)

Arguments

x	a GAlignmentPairs or GRanges to be scored w/featureScores
anno	annotations, e.g. Homo.sapiens or Mus.musculus
ordering	arg to pass to binPlots()
span	smoother span
smoothing	smoothing width
...	args to pass along to binPlots

Value

whatever binPlots returns

RamsinghLab/ATACseeker documentation built on May 8, 2019, 8:05 a.m.