fragmentLengths: get fragment sizes for a GAlignmentPairs object (can be slow)
In RamsinghLab/ATACseeker: Utilities for ATACseq QC, differential accessibility, and integration
Description
Usage
Arguments
Value
Description
get fragment sizes for a GAlignmentPairs object (can be slow)
Usage
1
fragmentLengths(galp, plotAs = c("hist", "density", "none"), ...)
Arguments
galp
the GAlignmentPairs object
plotAs
hist[ogram, default], density, or none
...
other arguments to pass along to density()
Value
(invisibly) the width of fragments in galp
RamsinghLab/ATACseeker documentation built on May 8, 2019, 8:05 a.m.
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Description Usage Arguments Value
Description
get fragment sizes for a GAlignmentPairs object (can be slow)
Usage
1 | fragmentLengths(galp, plotAs = c("hist", "density", "none"), ...)
|
Arguments
galp |
the GAlignmentPairs object |
plotAs |
hist[ogram, default], density, or none |
... |
other arguments to pass along to density() |
Value
(invisibly) the width of fragments in galp
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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