Files in Roestlab/mstools
OpenSWATH Mass Spectrometry Data Exploration
.gitignore
DESCRIPTION
NAMESPACE
R/Mode.R
R/RcppExports.R
R/XICMasterPlotFcn.R
R/catOSWruns.R
R/drawNakedPeptide.R
R/filterOSWdb.R
R/filterPQPdb.R
R/filterSQMASSdb.R
R/getChromatogramDataPoints.R
R/getModificationPosition.R
R/getOSWData.R
R/getOSWReportsVisualization.R
R/getPepLibData.R
R/getRunID.R
R/getTransitionScores.R
R/getUnimodMapping.R
R/getXIC.R
R/log_setup.R
R/mstools-package.R
R/pairwise_comparison.R
R/python_dependencies_installer.R
R/sysdata/unimod_tables.xml
R/unimod_mapping-data.R
README.md
data/blob_MSData_INT.rds
data/blob_MSData_RT.rds
data/unimod_mapping.RData
inst/extdata/Synthetic_Dilution_Phosphoproteomics/manual_annotations/chludwig_K150309_013_SW_0_filtered.tsv
inst/extdata/Synthetic_Dilution_Phosphoproteomics/mzml/chludwig_K150309_013_SW_0.chrom.mzML
inst/extdata/Synthetic_Dilution_Phosphoproteomics/osw/merged.merged.osw
inst/extdata/Synthetic_Dilution_Phosphoproteomics/pqp/psgs_phospho_optimized_decoys.pqp
inst/extdata/Synthetic_Dilution_Phosphoproteomics/sqmass/chludwig_K150309_013_SW_0.chrom.sqMass
man/Mode.Rd
man/XICMasterPlotFcn_.Rd
man/catOSWruns_.Rd
man/codenameTounimod.Rd
man/d_score_hist.Rd
man/filterOSWdb.Rd
man/filterPQPdb.Rd
man/filterSQMASSdb.Rd
man/generateUniModMapping_.Rd
man/getChromatogramDataPoints_.Rd
man/getModificationPosition_.Rd
man/getOSWData_.Rd
man/getPepLibData_.Rd
man/getRunID_.Rd
man/getTransitionScores_.Rd
man/getXIC.Rd
man/log_setup.Rd
man/osw_reports_visualization.Rd
man/pairwise_comparison.Rd
man/unimodTocodename.Rd
man/unimod_mapping.Rd
src/.gitignore
src/MSNumpress.cpp
src/MSNumpress.hpp
src/RcppExports.cpp
src/timesTwo.cpp
vignettes/.gitignore
vignettes/imgs/d_score_distribution.png
vignettes/imgs/sqMass_Chromatogram_Output.png
vignettes/mstools_data_exploration_and_visualization.Rmd
