Files in Roestlab/mstools
OpenSWATH Mass Spectrometry Data Exploration

.gitignore
DESCRIPTION
NAMESPACE
R/Mode.R R/RcppExports.R R/XICMasterPlotFcn.R R/catOSWruns.R R/drawNakedPeptide.R R/filterOSWdb.R R/filterPQPdb.R R/filterSQMASSdb.R R/getChromatogramDataPoints.R R/getModificationPosition.R R/getOSWData.R R/getOSWReportsVisualization.R R/getPepLibData.R R/getRunID.R R/getTransitionScores.R R/getUnimodMapping.R R/getXIC.R R/log_setup.R R/mstools-package.R R/pairwise_comparison.R R/python_dependencies_installer.R
R/sysdata/unimod_tables.xml
R/unimod_mapping-data.R README.md
data/blob_MSData_INT.rds
data/blob_MSData_RT.rds
data/unimod_mapping.RData
inst/extdata/Synthetic_Dilution_Phosphoproteomics/manual_annotations/chludwig_K150309_013_SW_0_filtered.tsv
inst/extdata/Synthetic_Dilution_Phosphoproteomics/mzml/chludwig_K150309_013_SW_0.chrom.mzML
inst/extdata/Synthetic_Dilution_Phosphoproteomics/osw/merged.merged.osw
inst/extdata/Synthetic_Dilution_Phosphoproteomics/pqp/psgs_phospho_optimized_decoys.pqp
inst/extdata/Synthetic_Dilution_Phosphoproteomics/sqmass/chludwig_K150309_013_SW_0.chrom.sqMass
man/Mode.Rd man/XICMasterPlotFcn_.Rd man/catOSWruns_.Rd man/codenameTounimod.Rd man/d_score_hist.Rd man/filterOSWdb.Rd man/filterPQPdb.Rd man/filterSQMASSdb.Rd man/generateUniModMapping_.Rd man/getChromatogramDataPoints_.Rd man/getModificationPosition_.Rd man/getOSWData_.Rd man/getPepLibData_.Rd man/getRunID_.Rd man/getTransitionScores_.Rd man/getXIC.Rd man/log_setup.Rd man/osw_reports_visualization.Rd man/pairwise_comparison.Rd man/unimodTocodename.Rd man/unimod_mapping.Rd
src/.gitignore
src/MSNumpress.cpp
src/MSNumpress.hpp
src/RcppExports.cpp
src/timesTwo.cpp
vignettes/.gitignore
vignettes/imgs/d_score_distribution.png
vignettes/imgs/sqMass_Chromatogram_Output.png
vignettes/mstools_data_exploration_and_visualization.Rmd
Roestlab/mstools documentation built on Jan. 25, 2020, 7:49 a.m.