Description Usage Arguments Value Examples
View source: R/getUnimodMapping.R
Conversion from UniMod ID to modification name
1 | unimodTocodename( mod_seq, out='sequence' )
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mod_seq |
A character vector containing of a peptide sequence, containing UniMod IDs to be converted to code names |
out |
A character vector. Default: 'sequence' will return mod_seq with covnerted unimod to codename. Otherwise, will return converted codename |
A character vector. Returned mod_seq with converted codename or returned codename
1 2 3 4 5 | mod_seq <- "EGHAQNPM(UniMod:35)EPS(UniMod:21)VPQLS(UniMod:21)LM(UniMod:35)DVK"
## Will return peptide sequence with modifciation code name
unimodTocodename( mod_seq )
## Out
## [1] "EGHAQNPM(Oxidation)EPS(Phospho)VPQLS(Phospho)LM(Oxidation)DVK"
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